PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01763-augustus-gene-0.32-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 329aa    MW: 36845.4 Da    PI: 5.2562
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01763-augustus-gene-0.32-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-13128179155
                                                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                    +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++++k+L+
  maker-scaffold01763-augustus-gene-0.32-mRNA-1 128 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS---YVQRGDQASIIGGAINFVKELE 179
                                                    79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.11E-13126183No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13126183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-16127191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-10128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MALEAVVFPQ DPFGYGGKDL YNLLGGGGSW SYDFGLAKED EQTGAFDFLE SQTESCLYGD  60
YNSSPADSMV PNLHHEVLQH SNPSLNSTDA TMLTPYESQQ GDNSTAMSTR PKRRRAKSRK  120
NKEEIENQRM THIAVERNRR KQMNEYLSVL RSLMPDSYVQ RGDQASIIGG AINFVKELEQ  180
RLQFLGANKE MESKSEADSS LPFSEFFTFP QYSTSSSHCD NSMAMSETDT HQVGVAQLAI  240
ADIEVTMVES HANLKIRSKR RPKLLLKVVS GLHGMRLTVL HLNVTTFDEV VLYSLSVKVE  300
DECKLSSVDE IATAVHQMLG RIQEEPMLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128139RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023898498.10.0transcription factor bHLH94-like
SwissprotQ9C7T42e-81BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2N9ED090.0A0A2N9ED09_FAGSY; Uncharacterized protein
STRINGPOPTR_0013s02680.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]