PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01735-augustus-gene-0.32-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 283aa    MW: 32178.8 Da    PI: 4.9398
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01735-augustus-gene-0.32-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-32113169258
                                                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                                           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                                                    dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers edp++++itYeg H h
  maker-scaffold01735-augustus-gene-0.32-mRNA-1 113 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSIEDPETLIITYEGLHLH 169
                                                    8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.095107172IPR003657WRKY domain
SuperFamilySSF1182906.41E-27109169IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-30109169IPR003657WRKY domain
SMARTSM007742.7E-36112171IPR003657WRKY domain
PfamPF031066.8E-26113169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEEVTHTWPD GLEDELVREL LDNQSPFFVL PESTTESKTS SPFDEETINR FISTVYSGPS  60
IEDIENVLSV TNPNMDQPQQ LPQARISMLD RSLNKVENKY TLKIKSYGNP MADDGYKWRK  120
YGQKSIKNSP NPRSYYRCTN PRCSAKKQVE RSIEDPETLI ITYEGLHLHF AYPYFLPSQS  180
HVNPTTKKPK KSISQAQEPQ DHETQQTQEV QESPKNLATS PLLITSEVCL QGWDKEEGMS  240
SQGLLEDMVP FMIRNPPTNT SSNSSSCSSY HSPPTSPSSL SWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-211111691371WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913869.11e-163probable WRKY transcription factor 49
TrEMBLA0A2N9GTI31e-131A0A2N9GTI3_FAGSY; Uncharacterized protein
STRINGGLYMA07G16040.21e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.13e-58WRKY DNA-binding protein 49