PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01717-augustus-gene-0.29-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 1126aa MW: 121289 Da PI: 4.4002

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01717-augustus-gene-0.29-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg +F++++ rH r H maker-scaffold01717-augustus-gene-0.29-mRNA-1 43 HVCRKCGWPFPNPHPSARHRRAH 65 79******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1126 aa Download sequence Send to blast
MGYGLSVANA ASLKGTDSST YQSPDPPKKK TFITSRLEGH GVHVCRKCGW PFPNPHPSAR 60 HRRAHKRICG TIEGYKLVDS EGNPHLNVSD DEHSDDDHKP PSPKVVEPSN IAKDIRGIGE 120 RSNRSENEVF SDAVAEFSDS GTNSGVEEPL KNAQEPATNV EKVAKDDPSI NKSLKDGGIA 180 EIIEPPSLSS ESSQTGNPEV PESIVNQLRT SPDFEDHVST FTVSSKASSF SDCIAEESVM 240 HSYDGKNSPS DSNNVKPETL TDASQESEKI SASEDVIECR LASVVQEPDT KGTEETKLDR 300 NLMASMVSPS RFAGKSFELV SKSEVTEGKT SDPAPDDTVV HTGEEHDGGS SSKMSQNDLT 360 PEVDSADHVN AATDTFQLKV DAAHVVKDLA SSGDIIESGN KKEEGNYSLD VLPVLDDSSD 420 HVNASIDTSQ INVIAAEGIH SANSGKISES CNKKEETNEN ENVNVLSVLD DTSILDPPAI 480 MVEDFKDNKG VKLHEYASLD SCATIMDKED ANGSASEEQY SSFQLRQLNE GAEVPSAAIL 540 VLDDSGDLNG SSVAVVNEVL VEEEADVSQV KLTINEKEVP AEAVITDMEE NHTVQSHEVP 600 ETHDICNDAL QVNFPENAME LSSDAVINQA TNLVGGDDAG NCEKAMNEKL DGIGDNTGKS 660 VSEENYTKIS GKIFESIGNP FESPVYPTIK LPEGDEAGDH EKGKIQKYDV DGIQIKDESK 720 EHLSMKTKLF SESASSLHES QTVADNKMDG SVKKLPEHEC MDFDGVYLSR VGKNSFSDTG 780 IKKDEINGNE VEVKSIGGST ANESYHGGHV NSLQKTSGDD MTKESNPSHL DSESSFQSSA 840 AVDENHAREF GVGASGITSE SLEGDSNFVK QQVAASAIDV SVDSSSQTDS LEGHWGSVSV 900 LSTQSDAAVV IDAEAFPSYH SQASAKAEKG SLEKPREAAE EQQHSEKSDM FEAPSFMTLV 960 ESRDGIDQKA AASEIQMGEN SQQQSASLQA GWFPSLTHVV NESQGRKKNE EIIAKVTNWS 1020 TGKQHTPLKT LLGEASLETK SKSPRPKENP APAIQKDETL PKDNGAFATT VNTILGPESP 1080 TNEAAKSQAK KEWNSPARYP SEIKREKRKV KGRPYWVQFV CCSSMN

Sequence ? help Back to Top

Protein Sequence Length: 1126 aa Download sequence Send to blast

MGYGLSVANA ASLKGTDSST YQSPDPPKKK TFITSRLEGH GVHVCRKCGW PFPNPHPSAR  60
HRRAHKRICG TIEGYKLVDS EGNPHLNVSD DEHSDDDHKP PSPKVVEPSN IAKDIRGIGE  120
RSNRSENEVF SDAVAEFSDS GTNSGVEEPL KNAQEPATNV EKVAKDDPSI NKSLKDGGIA  180
EIIEPPSLSS ESSQTGNPEV PESIVNQLRT SPDFEDHVST FTVSSKASSF SDCIAEESVM  240
HSYDGKNSPS DSNNVKPETL TDASQESEKI SASEDVIECR LASVVQEPDT KGTEETKLDR  300
NLMASMVSPS RFAGKSFELV SKSEVTEGKT SDPAPDDTVV HTGEEHDGGS SSKMSQNDLT  360
PEVDSADHVN AATDTFQLKV DAAHVVKDLA SSGDIIESGN KKEEGNYSLD VLPVLDDSSD  420
HVNASIDTSQ INVIAAEGIH SANSGKISES CNKKEETNEN ENVNVLSVLD DTSILDPPAI  480
MVEDFKDNKG VKLHEYASLD SCATIMDKED ANGSASEEQY SSFQLRQLNE GAEVPSAAIL  540
VLDDSGDLNG SSVAVVNEVL VEEEADVSQV KLTINEKEVP AEAVITDMEE NHTVQSHEVP  600
ETHDICNDAL QVNFPENAME LSSDAVINQA TNLVGGDDAG NCEKAMNEKL DGIGDNTGKS  660
VSEENYTKIS GKIFESIGNP FESPVYPTIK LPEGDEAGDH EKGKIQKYDV DGIQIKDESK  720
EHLSMKTKLF SESASSLHES QTVADNKMDG SVKKLPEHEC MDFDGVYLSR VGKNSFSDTG  780
IKKDEINGNE VEVKSIGGST ANESYHGGHV NSLQKTSGDD MTKESNPSHL DSESSFQSSA  840
AVDENHAREF GVGASGITSE SLEGDSNFVK QQVAASAIDV SVDSSSQTDS LEGHWGSVSV  900
LSTQSDAAVV IDAEAFPSYH SQASAKAEKG SLEKPREAAE EQQHSEKSDM FEAPSFMTLV  960
ESRDGIDQKA AASEIQMGEN SQQQSASLQA GWFPSLTHVV NESQGRKKNE EIIAKVTNWS  1020
TGKQHTPLKT LLGEASLETK SKSPRPKENP APAIQKDETL PKDNGAFATT VNTILGPESP  1080
TNEAAKSQAK KEWNSPARYP SEIKREKRKV KGRPYWVQFV CCSSMN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023927705.1	0.0	uncharacterized protein LOC112039093 isoform X1
TrEMBL	A0A2N9EK70	0.0	A0A2N9EK70_FAGSY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5051	17	19