PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01546-augustus-gene-0.28-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 243aa    MW: 27756.5 Da    PI: 4.5255
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01546-augustus-gene-0.28-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-193589256
                                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                       Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                                   +++++f++eq++ Le++Fe+++ +  +++ eLA++lgL+ rqV +WFqN+Ra++k
  maker-scaffold01546-augustus-gene-0.28-mRNA-1 35 KNKRRFSDEQIKSLETMFESESRLEPRKKLELARELGLQPRQVAIWFQNKRARWK 89
                                                   67789*************************************************9 PP
2HD-ZIP_I/II120.58.5e-3936127293
                                    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyea 65 
                                                    +krr+s+eq+k+LE++Fe+e++Lep++K elareLglqprqva+WFqn+RAR+k+k+lE+dy++
  maker-scaffold01546-augustus-gene-0.28-mRNA-1  36 NKRRFSDEQIKSLETMFESESRLEPRKKLELARELGLQPRQVAIWFQNKRARWKSKNLERDYST 99 
                                                    79************************************************************** PP

                                    HD-ZIP_I/II  66 LkraydalkeenerLekeveeLreelke 93 
                                                    L+  y+ l++  e+L+ke+++L  +l++
  maker-scaffold01546-augustus-gene-0.28-mRNA-1 100 LRGDYNDLASTFEALKKEKQALVVQLQK 127
                                                    ***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-201592IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-202591IPR009057Homeodomain-like
PROSITE profilePS5007118.4953191IPR001356Homeobox domain
SMARTSM003893.1E-173395IPR001356Homeobox domain
PfamPF000466.0E-173589IPR001356Homeobox domain
CDDcd000863.81E-154092No hitNo description
PRINTSPR000313.5E-66271IPR000047Helix-turn-helix motif
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PRINTSPR000313.5E-67187IPR000047Helix-turn-helix motif
PfamPF021831.1E-1291133IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLDHSEYSPS AVVAAESFGC MDMDSHTTSR KKKSKNKRRF SDEQIKSLET MFESESRLEP  60
RKKLELAREL GLQPRQVAIW FQNKRARWKS KNLERDYSTL RGDYNDLAST FEALKKEKQA  120
LVVQLQKLND LMQRPQEERQ CCSEGVAANS TQDELDNGDT NKCESETKPS LSTERSEHGG  180
GVLSDEDSNI KAEYFTLEDE PSLLDMVEPA DGSLTSTEDW SSLNSDGLFD QSNGNSQWWD  240
FWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023880884.11e-144homeobox-leucine zipper protein ATHB-12-like
SwissprotP468974e-73ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2I4DDP31e-127A0A2I4DDP3_JUGRE; homeobox-leucine zipper protein ATHB-12-like
STRINGPOPTR_0014s09860.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-70homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]