PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01463-snap-gene-0.38-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 337aa    MW: 37253 Da    PI: 10.0587
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01463-snap-gene-0.38-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31266323359
                                                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                                D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  maker-scaffold01463-snap-gene-0.38-mRNA-1 266 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLVVTYEGEHNHS 323
                                                99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-17216262IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.4E-33252323IPR003657WRKY domain
PROSITE profilePS5081130.928259325IPR003657WRKY domain
SuperFamilySSF1182906.8E-27261323IPR003657WRKY domain
SMARTSM007742.6E-38264324IPR003657WRKY domain
PfamPF031065.5E-27266322IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAVEFMMDYR NNNFSAKMEE NAVQEAASGL ESVEKLIRLL SQSQQQQQQQ QQQQQYQSQS  60
QNQSSSEMER DCKAVADVAV SKFKKVISLL GRTRTGHARF RRAPLAPPPP LVSNQSQERS  120
APEPRVYHAT PIQQIPPLPQ YHGESFMPKN GVIERRDSST TTINFSYSSA ATSFMSSLTG  180
DTDSKQQPSS SSAFQITNLS QVSSVGKPPL STASLKRKCS SENLGSGKCG GSSGRCHCSK  240
KSRKLRLKRV VRVPAISLKM ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK  300
HVERALDDPA MLVVTYEGEH NHSLSVAEAS NLILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21252324273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6101000.0AB610100.1 Castanea crenata mRNA, microsatellite: PEB107, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023918500.10.0probable WRKY transcription factor 7 isoform X1
SwissprotQ9STX03e-95WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2N9FE900.0A0A2N9FE90_FAGSY; Uncharacterized protein
STRINGPOPTR_0007s10670.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-66WRKY DNA-binding protein 7