PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01323-snap-gene-0.39-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 408aa MW: 44754.3 Da PI: 4.8555

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01323-snap-gene-0.39-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00077	317	339	32	54
..TTS-STCHHHHHHHHHHHHHH CS HLH 32 kapskKlsKaeiLekAveYIksL 54 + +s+ + a++L +A+eYIk L maker-scaffold01323-snap-gene-0.39-mRNA-1 317 RDSSTVTDTASVLSEAIEYIKFL 339 556677899************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.6E-4	319	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MADEFNTSGN WWDSTSRSRF ESGTSSSSGL SNLGSFVWTT DMAEIKARTN TMDSMSSVSG 60 SSVVFQEPQK LQGHESAGGG DPSLQMMGLG LSTQAMDWNQ SLLRGEKAAD SSFRAMLQEN 120 LNSNTNFQQE TGMASSQVQW RSEKMFSGMS GGESSSNEFK QLNRGFSLDQ PSFSPQYSSG 180 DSTVTCQGLP SSFQMDSSAM YGSPSTILQG LLGPDSNQPQ QPSFENRPMN FSYPANYGVN 240 SSELLPSWSA KVPPFLRSSP PKQTVPHNQL HFSNNAPFWN ASEAAMKDGR ASFFPLMQQQ 300 FPTTSFEEKP KNISEVRDSS TVTDTASVLS EAIEYIKFLH EQVLSTPYMK SGAPIQHQQN 360 SDKSKDPEGP KQDLRSRGLC LVPVSSTFPV THETTVDFWT PTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MADEFNTSGN WWDSTSRSRF ESGTSSSSGL SNLGSFVWTT DMAEIKARTN TMDSMSSVSG  60
SSVVFQEPQK LQGHESAGGG DPSLQMMGLG LSTQAMDWNQ SLLRGEKAAD SSFRAMLQEN  120
LNSNTNFQQE TGMASSQVQW RSEKMFSGMS GGESSSNEFK QLNRGFSLDQ PSFSPQYSSG  180
DSTVTCQGLP SSFQMDSSAM YGSPSTILQG LLGPDSNQPQ QPSFENRPMN FSYPANYGVN  240
SSELLPSWSA KVPPFLRSSP PKQTVPHNQL HFSNNAPFWN ASEAAMKDGR ASFFPLMQQQ  300
FPTTSFEEKP KNISEVRDSS TVTDTASVLS EAIEYIKFLH EQVLSTPYMK SGAPIQHQQN  360
SDKSKDPEGP KQDLRSRGLC LVPVSSTFPV THETTVDFWT PTFGGTFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023913117.1	0.0	transcription factor bHLH123-like
Swissprot	Q8GXT3	5e-65	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A2N9HL90	0.0	A0A2N9HL90_FAGSY; Uncharacterized protein
STRING	XP_008226756.1	0.0	(Prunus mume)
STRING	XP_008386041.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-64	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]