PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00830-augustus-gene-0.42-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 292aa MW: 33928.5 Da PI: 6.4055

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00830-augustus-gene-0.42-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164	5.4e-51	7	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64 lppGfrFhPtdeelv++yL++k+++ +l + +i+e+d+yk++Pw+Lp+++ +ekewyfFs+r maker-scaffold00830-augustus-gene-0.42-mRNA-1 7 LPPGFRFHPTDEELVNHYLCRKCASLPLAV-PIIREIDLYKYDPWQLPEMALYGEKEWYFFSPR 69 79***********************999.88***********7666789***** PP NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ky++g+r+nra+ +gyWkatg dk++ + + g+kk Lvfy g+ap+g kt+W+mheyrl maker-scaffold00830-augustus-gene-0.42-mRNA-1 70 DRKYPNGSRPNRAAGTGYWKATGADKPIGK--PKPLGIKKALVFYAGKAPRGIKTNWIMHEYRL 131 ************************98..789*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-62	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.089	7	157	IPR003441	NAC domain
Pfam	PF02365	4.6E-27	8	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MSSELELPPG FRFHPTDEEL VNHYLCRKCA SLPLAVPIIR EIDLYKYDPW QLPEMALYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGKP KPLGIKKALV FYAGKAPRGI 120 KTNWIMHEYR LANVDRSAGK KNNLRLDDWV LCRIYNKKGT LEKYQPLDQK KEKFAEMEEE 180 QKPKIMVSGQ NTTATQAMIS HDHLHMDTSD SVPVLHTDTS CSEQVVSPEV TWDKEVQSQP 240 KWNDNDIDNV FDYFQYNYMD GFTEDPFGPQ LQYPTDQLSP LQDMFMYLQK PL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-81	3	163	11	174	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023924037.1	0.0	NAC domain-containing protein 2-like
Swissprot	Q39013	1e-130	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A2N9ECK1	0.0	A0A2N9ECK1_FAGSY; Uncharacterized protein
STRING	XP_006464926.1	1e-158	(Citrus sinensis)
STRING	POPTR_0005s07060.1	1e-158	(Populus trichocarpa)
STRING	XP_006432090.1	1e-158	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1258	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-122	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]