PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00547-augustus-gene-0.26-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 520aa    MW: 56543.3 Da    PI: 5.1439
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00547-augustus-gene-0.26-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.25.6e-13176198426
                                                    ---SGGGGTS--TTTTT-SS-SS CS
                                        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                                    e C+f+++tGtCk+G++C+F+H+
  maker-scaffold00547-augustus-gene-0.26-mRNA-1 176 EDCSFYLKTGTCKFGSNCRFNHP 198
                                                    89********************9 PP
2zf-CCCH26.21.4e-08223244425
                                                    ---SGGGGTS--TTTTT-SS-S CS
                                        zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                                                     +C++++r+G Ck+G  C+++H
  maker-scaffold00547-augustus-gene-0.26-mRNA-1 223 LECKYYLRSGGCKFGKACRYNH 244
                                                    58******************** PP
3zf-CCCH42.51.1e-13267291226
                                                    -S---SGGGGTS--TTTTT-SS-SS CS
                                        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                                    ++++C++++rtG CkyG++CkF+H+
  maker-scaffold00547-augustus-gene-0.26-mRNA-1 267 GEKECPYYMRTGSCKYGANCKFNHP 291
                                                    7899********************9 PP
4zf-CCCH26.61e-08402428127
                                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                                        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                                    +++++C+++++tG Ck+ ++Ck++H++
  maker-scaffold00547-augustus-gene-0.26-mRNA-1 402 PGQPECSYYLKTGDCKFKSNCKYHHPK 428
                                                    5789*********************96 PP
5zf-CCCH29.99.6e-10451473426
                                                    ---SGGGGTS--TTTTT-SS-SS CS
                                        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                                     +C +++ +G+Ck+G+ CkF H+
  maker-scaffold00547-augustus-gene-0.26-mRNA-1 451 NICAHYSLYGICKFGPACKFDHP 473
                                                    68********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.03E-6171200IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.291172200IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10176198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5178197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375219247IPR000571Zinc finger, CCCH-type
SMARTSM003560.0048219246IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-6224244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5224247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23265293IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-7265292IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-11267291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6267292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-6271290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.239401429IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-4401428IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-6403428IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-5405429IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6445473IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479447475IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4447474IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-7451473IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MMGSSESISV PNSNPNTNGL ELGLDSSQSP NPNPDLDNQT LPDPKVEELN EKLERLDLKE  60
EPESKKKSEE EKEEEEKDGS FGLKEVVREK SDLNEEEEEE KRGGSEWSFG NENENEDEVV  120
IGIDKVVVES GGGGGGGGSG GSGSGSGSGD EVEKKEERNG GGKKFQYQYP VRPEAEDCSF  180
YLKTGTCKFG SNCRFNHPVK RKNQAIKDKV KEKEELAERP GQLECKYYLR SGGCKFGKAC  240
RYNHTRGKTT GSTFLELNFL GLPIRPGEKE CPYYMRTGSC KYGANCKFNH PDPTAVAGSD  300
PSSGFGNGGS VSLGASQSSV TSWSPPRAMN ENSPFVPVVL SPTPGVPPQN SDWNGYQAPV  360
YTPERTINLP PPYLMNPPTT QTTNLFSHQQ QQIQFEDYPE RPGQPECSYY LKTGDCKFKS  420
NCKYHHPKNR NVKSPPCALS DKGLPLRPEQ NICAHYSLYG ICKFGPACKF DHPINPPSSP  480
MTGVDQHSSY GISVTSENAG VAGSGSGSGS GSDSPLQQPV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6100990.0AB610099.1 Castanea crenata mRNA, microsatellite: PEB106, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919683.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ9STM41e-141C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2N9F7T80.0A0A2N9F7T8_FAGSY; Uncharacterized protein
STRINGGLYMA17G13580.11e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-142C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]