PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00328-augustus-gene-0.41-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 29204.6 Da PI: 7.2346 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l +v+++G +W+ ++ g+ R++k+c++rw +yl maker-scaffold00328-augustus-gene-0.41-mRNA-1 14 KGAWSPEEDNKLRAYVQRYGHWNWRELPKFAGLSRCGKSCRLRWMNYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 59.6 | 7.1e-19 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eEde++++ +++lG++ W++Ia++++ gRt++++k++w+++l maker-scaffold00328-augustus-gene-0.41-mRNA-1 67 RGKYTKEEDEKIIKWHQELGNK-WSKIAAKLP-GRTDNEIKNHWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.196 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.48E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.41E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.918 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-17 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.00E-13 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-27 | 69 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVKAPYYDKN GVKKGAWSPE EDNKLRAYVQ RYGHWNWREL PKFAGLSRCG KSCRLRWMNY 60 LRPDVKRGKY TKEEDEKIIK WHQELGNKWS KIAAKLPGRT DNEIKNHWHT HLKKRAKENQ 120 VSSEVKEHPS DVSQCETISR NRDSEVESVP ANAPSRHILE SSPLSPETSS SYFSTLSSHL 180 QAPPPPSGIN QVSEDGVASS EAFDEFIGDF WTEPFVADNT FFQNSFPLSL LNRGLISPCA 240 SYYDDDIDLF YQVM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023872104.1 | 1e-172 | transcription factor MYB15-like | ||||
TrEMBL | A0A2N9IZQ9 | 1e-143 | A0A2N9IZQ9_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0019s14130.1 | 1e-101 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 2e-58 | myb domain protein 63 |