PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00306-augustus-gene-0.18-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92342.9 Da    PI: 6.5039
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00306-augustus-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181775357
                                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                                       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                                   k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  maker-scaffold00306-augustus-gene-0.18-mRNA-1 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                                                   5679*****************************************************97 PP
2START178.93.1e-561613692205
                                                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHH CS
                                          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveel 65 
                                                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+
  maker-scaffold00306-augustus-gene-0.18-mRNA-1 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEI 223
                                                    7899******************************************************.88888 PP

                                                    CCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEE CS
                                          START  66 lddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwviv 126
                                                    l+d++ W ++++++++l+v+ ++  g+++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++
  maker-scaffold00306-augustus-gene-0.18-mRNA-1 224 LKDRPSWFRDCRAVDVLNVLPTAngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVC 287
                                                    88888****************9999*************************************** PP

                                                    EEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
                                          START 127 dvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                                                    ++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s
  maker-scaffold00306-augustus-gene-0.18-mRNA-1 288 ERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYES 351
                                                    **********9988899*********************************************** PP

                                                    HHHHHHHHHHHHTXXXXX CS
                                          START 188 glaegaktwvatlqrqce 205
                                                    +++ ++kt++ +l+++++
  maker-scaffold00306-augustus-gene-0.18-mRNA-1 352 STVLAQKTTMTALRQLRQ 369
                                                    *************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4991276IPR001356Homeobox domain
SMARTSM003891.2E-151480IPR001356Homeobox domain
CDDcd000869.31E-171777No hitNo description
SuperFamilySSF466898.13E-171780IPR009057Homeodomain-like
PfamPF000462.9E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181975IPR009057Homeodomain-like
CDDcd146861.14E-669108No hitNo description
PROSITE profilePS5084825.535151366IPR002913START domain
CDDcd088752.61E-79155371No hitNo description
SMARTSM002345.2E-41160370IPR002913START domain
SuperFamilySSF559613.71E-38160371No hitNo description
Gene3DG3DSA:3.30.530.201.9E-23160366IPR023393START-like domain
PfamPF018521.1E-53161369IPR002913START domain
PfamPF086701.5E-52695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MAMSCKDGKQ SAIDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
TQNTTLATKD TSCESVVTSG QHHLTPQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDRPSW FRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTSVLE DGSLVVCERS LKNTQNGPSM  300
PPVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPWS VPEVLRPLYE SSTVLAQKTT  360
MTALRQLRQI AHEVSQSTVT GWGRRPAALR ALSQRLSRGF NEALNGFTDE GWSMMGNDGM  420
DDVTILVNSS PDKLMGLNLP FATGFPAVSN AVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYSA AAVKIGPCSL PGSRVGSFGG QVILPLAHTM EHEEFLEVIK LEGVGHSPED  540
AIMPREMFLL QLCSGMDENA VGTCAELIFA PIDASFADDA PLLPSGFRII PLDSGKEASS  600
PNRTLDLASA LEIGPAGNKA SNDYSANSGC VRSVMTIAFE FAFESHMQEH VASMARQYVR  660
SIISSVQRVA LALSPSHLSS HAGLRTPLGT PEAQTLARWI CQSYRCYMSV ELLKSGNEGS  720
ESILKTLWHH SDAIMCCSLK ALPVFTFANQ AGLDMLETTL VALQDITLEK IFDDHGRKTL  780
CSEFPQIMQQ GFACLQGGIC LSSMGRPVSY ERAVAWKVLN EEENAHCICF MFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023898511.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2N9FQU90.0A0A2N9FQU9_FAGSY; Uncharacterized protein
STRINGEOY268990.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]