PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00289-augustus-gene-0.31-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 25967.6 Da PI: 8.026 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.3 | 4.3e-11 | 80 | 127 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ++l + + +K +Ka+iL Av+ + +L maker-scaffold00289-augustus-gene-0.31-mRNA-1 80 SKASREKLRRDRLNDKFVELGTILEPG---RPPKTDKAAILVDAVRMVTQL 127 5678**********************8...89**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.906 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.6E-9 | 80 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-13 | 81 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.3E-13 | 81 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-8 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.57E-7 | 84 | 132 | No hit | No description |
CDD | cd14686 | 0.0056 | 142 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MVTPENNTNW LFDYGLMDDI PVPDANFSVP NPGFTWPVQA LNGSSSVSVE IDGSLGDSDG 60 VKESCPKKRG RSESCCASSS KASREKLRRD RLNDKFVELG TILEPGRPPK TDKAAILVDA 120 VRMVTQLRGE AQKLKDSNSN LQEKIKELKA EKNELRDEKQ RLKAEKEKLE QQMKAMNAQP 180 SYLAPPPAIP AAYAAQGQAP GNKLLPIIGY PGVAMWQFMP PAAVDTSQDH VLRPPVA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 71 | PKKRGRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023915830.1 | 1e-175 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 1e-114 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2N9J3J5 | 1e-157 | A0A2N9J3J5_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_015179m | 1e-143 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 4e-95 | bHLH family protein |