PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00285-augustus-gene-0.37-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 260aa MW: 29457.6 Da PI: 5.9988 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 102.3 | 4.7e-32 | 84 | 171 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkak 65 fYn+YA+++GFs+r+s ++s+r+g+i++r+ vCs+eg+r+e ++ +++r+r+ tr+gCka+ maker-scaffold00285-augustus-gene-0.37-mRNA-1 84 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRREGGEN--RSKRQRTITRVGCKAQ 145 9*****************************************9998..999************* PP FAR1 66 lkvkkekdgkwevtkleleHnHelap 91 ++vkk+++g+w v+kl++eHnHel+p maker-scaffold00285-augustus-gene-0.37-mRNA-1 146 MTVKKQSSGRWAVSKLVKEHNHELVP 171 ************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.9E-29 | 84 | 171 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDFEPLNIEN EVMEFDASGS MEDDTATLDV ENHDDDYERD YNDESFEGSN PSTSNVFLTH 60 NGEEPNLEPY EGMEFDSEQA ARIFYNSYAR RIGFSTRVSV YQRSRRDGSI ICRQIVCSRE 120 GFRREGGENR SKRQRTITRV GCKAQMTVKK QSSGRWAVSK LVKEHNHELV PPDKAAKKVA 180 AAKKHGSGVH QSALDNGSPQ LQSYSLDQDK EIQALTAELE NASQQCEAYR AKLSAVLKNL 240 EEQKLKISVK VQNVRLNLRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023918432.1 | 1e-122 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2N9IUY1 | 1e-108 | A0A2N9IUY1_FAGSY; Uncharacterized protein | ||||
STRING | VIT_18s0122g00530.t01 | 1e-84 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 8e-38 | FAR1 family protein |