PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00285-augustus-gene-0.37-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 260aa    MW: 29457.6 Da    PI: 5.9988
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00285-augustus-gene-0.37-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1102.34.7e-3284171291
                                           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkak 65 
                                                    fYn+YA+++GFs+r+s  ++s+r+g+i++r+ vCs+eg+r+e  ++  +++r+r+ tr+gCka+
  maker-scaffold00285-augustus-gene-0.37-mRNA-1  84 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRREGGEN--RSKRQRTITRVGCKAQ 145
                                                    9*****************************************9998..999************* PP

                                           FAR1  66 lkvkkekdgkwevtkleleHnHelap 91 
                                                    ++vkk+++g+w v+kl++eHnHel+p
  maker-scaffold00285-augustus-gene-0.37-mRNA-1 146 MTVKKQSSGRWAVSKLVKEHNHELVP 171
                                                    ************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.9E-2984171IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDFEPLNIEN EVMEFDASGS MEDDTATLDV ENHDDDYERD YNDESFEGSN PSTSNVFLTH  60
NGEEPNLEPY EGMEFDSEQA ARIFYNSYAR RIGFSTRVSV YQRSRRDGSI ICRQIVCSRE  120
GFRREGGENR SKRQRTITRV GCKAQMTVKK QSSGRWAVSK LVKEHNHELV PPDKAAKKVA  180
AAKKHGSGVH QSALDNGSPQ LQSYSLDQDK EIQALTAELE NASQQCEAYR AKLSAVLKNL  240
EEQKLKISVK VQNVRLNLRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023918432.11e-122protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2N9IUY11e-108A0A2N9IUY1_FAGSY; Uncharacterized protein
STRINGVIT_18s0122g00530.t011e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.18e-38FAR1 family protein