PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00249-snap-gene-0.32-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

WRKY

Protein Properties

Length: 538aa MW: 58995.7 Da PI: 8.242

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00249-snap-gene-0.32-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.9	5.7e-30	191	250	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+ +d +++++tYeg+Hnh+ maker-scaffold00249-snap-gene-0.32-mRNA-1 191 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCFNDMSILITTYEGKHNHP 250 58************************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-31	176	252	IPR003657	WRKY domain
SuperFamily	SSF118290	4.84E-27	184	252	IPR003657	WRKY domain
PROSITE profile	PS50811	29.218	186	252	IPR003657	WRKY domain
SMART	SM00774	4.6E-36	191	251	IPR003657	WRKY domain
Pfam	PF03106	2.9E-26	192	250	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MEKNTVDLLS RRKNQEDQLK LAEAEMGEVK EENERLKMLL EKTVKEYQSL QMQFVDILQQ 60 EAKSKDTVPS HQAKEGPELV SLSLGITSSE PKKEDKKNNS FRNGQEEEKL NGALSLGLQD 120 YRFEPSSAEH VRNTSCSNNS FEEQKEEEPT EIWPPRKILK TMKIGDDEVS QQSQVKKTRV 180 SVRARCDTPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVS PSCPVRKQVQ RCFNDMSILI 240 TTYEGKHNHP LPVSATAMAS TTSAAVSMLQ SQSSISSQGG LNTSAIVPIS TSTNSHGFNF 300 TLSQNPSPQQ LYGLPNSSIS TLNSHPTITL DLTTNAPSGL SSSFSSAPRY PSTSLNFSSS 360 FSPSLEPNYI FQTHWNNGPT SYNNHGTVPA YNKNPIGSLN SIEKQPFQEQ LYQPYMKESI 420 VAATKAIASN PKFQSVLAAA LTSYVGASSG GVKENQGACE SSSSSMNFKW GESHTINPIY 480 SSSQNGIGCG SSYLNKSSSF NSPKQGVLAL FPPNSLQLSA SNNCASAAPP DNRDHFKL

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MEKNTVDLLS RRKNQEDQLK LAEAEMGEVK EENERLKMLL EKTVKEYQSL QMQFVDILQQ  60
EAKSKDTVPS HQAKEGPELV SLSLGITSSE PKKEDKKNNS FRNGQEEEKL NGALSLGLQD  120
YRFEPSSAEH VRNTSCSNNS FEEQKEEEPT EIWPPRKILK TMKIGDDEVS QQSQVKKTRV  180
SVRARCDTPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVS PSCPVRKQVQ RCFNDMSILI  240
TTYEGKHNHP LPVSATAMAS TTSAAVSMLQ SQSSISSQGG LNTSAIVPIS TSTNSHGFNF  300
TLSQNPSPQQ LYGLPNSSIS TLNSHPTITL DLTTNAPSGL SSSFSSAPRY PSTSLNFSSS  360
FSPSLEPNYI FQTHWNNGPT SYNNHGTVPA YNKNPIGSLN SIEKQPFQEQ LYQPYMKESI  420
VAATKAIASN PKFQSVLAAA LTSYVGASSG GVKENQGACE SSSSSMNFKW GESHTINPIY  480
SSSQNGIGCG SSYLNKSSSF NSPKQGVLAL FPPNSLQLSA SNNCASAAPP DNRDHFKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	178	252	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023928063.1	0.0	probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	1e-109	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2N9EBW9	0.0	A0A2N9EBW9_FAGSY; Uncharacterized protein
STRING	VIT_01s0026g01730.t01	1e-163	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	5e-64	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]