PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00049_0250 | ||||||||
Common Name | KFL_000490250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | C2H2 | ||||||||
Protein Properties | Length: 334aa MW: 38857.6 Da PI: 8.0871 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 89 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg ++ + L++H + H kfl00049_0250 89 YRCGVCGAKLKTADKLEKHFKQlH 112 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 9.3E-10 | 12 | 65 | IPR029060 | PIN domain-like |
PROSITE profile | PS50157 | 10.803 | 89 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 91 | 112 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 9.61E-10 | 122 | 255 | No hit | No description |
Pfam | PF01936 | 4.7E-9 | 165 | 243 | IPR021139 | NYN domain, limkain-b1-type |
Gene3D | G3DSA:3.40.50.1010 | 9.3E-10 | 169 | 237 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MEGEAPQILR PQVAIYWDLD NKTPNQDPRV VADRIRAIGE RFGQVKEFRA YANRHTFQHI 60 PSYVREEREL RKQVRLEERQ GVRVSDEPYR CGVCGAKLKT ADKLEKHFKQ LHERERQKKV 120 NRAQSLSKKK PSQSKRLFAK IKEKDARNTY FDVARDIITP KVGYRLMSDL KSRGVRVREV 180 KDQSQAADAA IISDLEYLLT KPNHVESVVL VSDDSDFGRA LARVRASERR VVVVGEKPGL 240 VKSADVLYHW WDVHEGLANR PDYRCPPERF EHRQGPRVGG LEAHELEADD YEEFEEFGEG 300 DEFGGLDEYG NYRDADVDEI LFGRSFEESR SWRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0U9HIL0 | 0.0 | A0A0U9HIL0_KLENI; C2H2 zinc finger protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3048 | 14 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-45 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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