PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.14.298.1
Common NameCOCSUDRAFT_9790
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family C3H
Protein Properties Length: 76aa    MW: 9020.65 Da    PI: 8.1454
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.14.298.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.6e-072851226
                  -S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                  +++ Cr+ +++G+Ck  + C+F H 
  gw1.14.298.1 28 RMPVCRTLLKFGECKD-PECPFKHN 51
                  6899************.*******7 PP
2zf-CCCH17.47.7e-065776525
                  --SGGGGTS--TTTTT-SS-S CS
       zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                  +C+ +   G+C yG+rC+F H
  gw1.14.298.1 57 ECNMYKL-GFCVYGPRCRFRH 76
                  5666666.***********77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.145125IPR000571Zinc finger, CCCH-type
SMARTSM003560.49124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5325IPR000571Zinc finger, CCCH-type
PfamPF146080.19422No hitNo description
PROSITE profilePS501037.7792650IPR000571Zinc finger, CCCH-type
SMARTSM003560.622652IPR000571Zinc finger, CCCH-type
PfamPF146080.0763850No hitNo description
PROSITE profilePS5010311.4885276IPR000571Zinc finger, CCCH-type
SMARTSM0035665376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-55876IPR000571Zinc finger, CCCH-type
PfamPF146080.0926676No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:1900363Biological Processregulation of mRNA polyadenylation
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0004521Molecular Functionendoribonuclease activity
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
QTVCTYWLKG LCMKGEECGF LHQLDPQRMP VCRTLLKFGE CKDPECPFKH NLEEVKECNM  60
YKLGFCVYGP RCRFRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6dnh_C7e-2027667143Cleavage and polyadenylation specificity factor subunit 4
6fbs_C3e-2027666142Cleavage and polyadenylation specificity factor subunit 4
6fuw_C3e-2027666142Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005645394.12e-50hypothetical protein COCSUDRAFT_9790, partial
SwissprotQ0DA509e-36C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLI0YR314e-49I0YR31_COCSC; Uncharacterized protein (Fragment)
STRINGXP_005645394.17e-50(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP349277
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]