PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_17.0001000037
Common NameOT_ostta17g00450
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family HB-other
Protein Properties Length: 335aa    MW: 36871.1 Da    PI: 5.0221
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_17.0001000037genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.6e-072713032254
                                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                      ++ p+++e+eeLA+  gLt++qV  WF N Ra+
  fgenesh1_pg.C_Chr_17.0001000037 271 KPIPTRAEKEELARLSGLTTTQVGDWFVNARAR 303
                                      577*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-17245310IPR009057Homeodomain-like
PROSITE profilePS5007110.576246307IPR001356Homeobox domain
SuperFamilySSF466898.55E-11252311IPR009057Homeodomain-like
PfamPF059204.8E-9271303IPR008422Homeobox KN domain
CDDcd000869.45E-8274307No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MTSGSIDGLD LLFDHGLDAR EGEGAPGLAV DVLAWDDVLN AFDAYCADGA DGRFDDLDAV  60
FATTWAREGC DARRRAAGEA REYIASVVRD ALGDGEDDDG GDARETTRRE AEDSATAIKY  120
VQSRANGRLR ASCIETGRKN RLKMLRDMFS AELRAFARRA EELERRAKDA AAKTAASVLC  180
LNLPDPAEVL RREFKSSLAN VLDAFDSAME HIAPRTAKTK SASSRDSERS NATVEITQSV  240
AAIQGRHDER ARKVLSQWLW DHFYPTEERL KPIPTRAEKE ELARLSGLTT TQVGDWFVNA  300
RARLWKPYIE GLIRGVYNDA MVKKALDLQA DASA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840416.10.0Homeobox KN domain
TrEMBLA0A096P8A90.0A0A096P8A9_OSTTA; Homeobox KN domain
STRINGA0A096P8A90.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP722266
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.15e-15BEL1-like homeodomain 11
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]