PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00202.3
Common NameAMTR_s00202p00017170
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family AP2
Protein Properties Length: 418aa    MW: 46902.3 Da    PI: 7.2363
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00202.3genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.43.1e-1260116155
                                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                             s+++GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  evm_27.model.AmTr_v1.0_scaffold00202.3  60 SRFRGVSRHRWTGRFEAHLWDkGSWNAsqKKKGKQ-GAYDEEESAARAYDLAALKYWG 116
                                             789******************99889994446666.********************98 PP
2AP250.93.8e-16159210155
                                     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                             s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  evm_27.model.AmTr_v1.0_scaffold00202.3 159 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAAAYDIAAIEYRG 210
                                             89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.75E-1460125IPR016177DNA-binding domain
PfamPF008474.8E-960116IPR001471AP2/ERF domain
CDDcd000189.88E-1760126No hitNo description
PROSITE profilePS5103217.97861124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-1261124IPR001471AP2/ERF domain
SMARTSM003801.3E-1761130IPR001471AP2/ERF domain
PRINTSPR003672.5E-56273IPR001471AP2/ERF domain
CDDcd000184.18E-12159220No hitNo description
SuperFamilySSF541711.5E-17159220IPR016177DNA-binding domain
PfamPF008474.4E-11159210IPR001471AP2/ERF domain
PROSITE profilePS5103218.439160218IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17160219IPR001471AP2/ERF domain
SMARTSM003801.1E-25160224IPR001471AP2/ERF domain
PRINTSPR003672.5E-5200220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAMMVKSEEN HEKRCLGITQ EKKCVKRRRR EHAPLTRSDD NGDSIKEIDQ SSSTAVKRSS  60
RFRGVSRHRW TGRFEAHLWD KGSWNASQKK KGKQGAYDEE ESAARAYDLA ALKYWGPTTF  120
TNFPVVDYEK EIQIMQNVTR EEYLASLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV  180
FGNKYLYLGT YSTQEEAAAA YDIAAIEYRG VNAVTNFDLS TYIRWLRPGG LNNMANLNQP  240
ERVASKIDES SIPPTPLSTM NESMAEDFRQ TTCLTWLPDI LHQPPLSPNS LTMTCRKSSS  300
SPTALSLLLQ SSVFRELVEK TSIASANEEA VSTGPTEDCR QRQRGNCPDV AASSIAIGDE  360
YGGIFYDSTH DLGDIPFICS SNDEDLVVEG SVEYFERAGS QQSLWSNVLN STIDVNM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011629127.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLW1NMM20.0W1NMM2_AMBTC; Uncharacterized protein
STRINGERM967280.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.36e-86AP2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]