PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00185.20
Common NameAMTR_s00185p00050380, LOC18442715
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 570aa    MW: 62373.5 Da    PI: 7.0562
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00185.20genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.16.1e-11427485563
                                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                              kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +a l++++
  evm_27.model.AmTr_v1.0_scaffold00185.20 427 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQN 485
                                              9*************************************************999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-18423487IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.898425488IPR004827Basic-leucine zipper domain
PfamPF001702.2E-9427485IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.9E-11427484No hitNo description
SuperFamilySSF579593.52E-11427478No hitNo description
CDDcd147037.64E-24428479No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MRSEMEESED TRNDLMQRLQ SSFATSSSSI PKFQNPEKLE IPQLNTSQMR APLRNFSPNY  60
SSENKRIGIP PSHPHFPPAS PYSSRSPAQP TTNSQSPGPH FGNTHSSPSH SRSLSQPAFF  120
SLDSLPPLSP SPYRDSSSTS DPVSTDVSME DRDTGPPNCT SSRNPPSPFP RPNSLRIGES  180
FTPRKLHRRS HSEIPFGFSS SSSLGFSSSG IQGKESLGVG FGDQPGKLGQ LVKREADWDR  240
ASDGQLEGMG ERKSEGDVAE DLFSAYMNLD QVDGFNLGPG EKQCIESNED FESGASRTKA  300
NGTKDNGNLS SSDEAESSST QRRNSNSSTE KKEAKGEGNR GNFGAPHHSR SVSMDSFMGK  360
MQSFGEDLKL PPSPGPTTGL ARHSHSNSMD GSATFSLEFG NGEFSGAELK KIMANEKLAE  420
IALTDPKRAK RILANRQSAA RSKERKMRYI SELEHKVQTL QTEATTLSAQ LTLLQRDSAG  480
LTNQNNELKF RLQAMEQQAQ LKDALNEALT EEVQRLKLAT AQLSEGQANN LAMKSQMFQM  540
PQQPSQLSVY QLQQQNNQKH SGNHREGNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852991.10.0probable transcription factor PosF21 isoform X1
TrEMBLU5D2720.0U5D272_AMBTC; Uncharacterized protein
STRINGERN144580.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.35e-88bZIP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]