PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

DBB

Protein Properties

Length: 228aa MW: 25484.7 Da PI: 6.9575

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00182.23	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.4	5.9e-08	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e ++++fC ++ lC+ C + H evm_27.model.AmTr_v1.0_scaffold00182.23 4 LCDACEGAPAIFFCAADEAALCRACDNKVH 33 7*************************9998 PP
2	zf-B_box	27.9	5e-09	52	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g H+ evm_27.model.AmTr_v1.0_scaffold00182.23 52 DVPRCDICENSPAFFYCEIDGSSLCLQCDMAVHVGgkrtHE 92 5799*****************************66666776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	4.9E-9	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.139	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.96E-6	3	47	No hit	No description
Pfam	PF00643	7.1E-7	3	42	IPR000315	B-box-type zinc finger
SMART	SM00336	2.3E-12	51	96	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.599	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.9E-7	52	92	IPR000315	B-box-type zinc finger
CDD	cd00021	1.10E-7	54	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0010100	Biological Process	negative regulation of photomorphogenesis
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0070370	Biological Process	cellular heat acclimation
GO:0071483	Biological Process	cellular response to blue light
GO:0005634	Cellular Component	nucleus
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MRTLCDACEG APAIFFCAAD EAALCRACDN KVHMCNKLAS RHVRVRLADP SDVPRCDICE 60 NSPAFFYCEI DGSSLCLQCD MAVHVGGKRT HERYLLLRQR VEFIGDKPTP IEDHAWQPME 120 KVEYKRDQNM QPHLMMNREG PKENNINHQG PRVPTYDSNA NNDKHDAKLI DLNARPHRNQ 180 GQPSNSSQKS SGMDTANNRD CASLVPVGSF KREVARNSVA DAKDVDM*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006854872.1	1e-171	B-box zinc finger protein 19 isoform X1
Refseq	XP_011627234.1	1e-171	B-box zinc finger protein 19 isoform X1
Refseq	XP_011627235.1	1e-171	B-box zinc finger protein 19 isoform X1
Swissprot	C0SVM5	6e-73	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	U5D1M9	1e-169	U5D1M9_AMBTC; Uncharacterized protein
STRING	ERN16339	1e-170	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3352	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	2e-75	DBB family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00182.23
Entrez Gene	18444646

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]