PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00160.12
Common NameAMTR_s00160p00054480
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Dof
Protein Properties Length: 210aa    MW: 22840.3 Da    PI: 5.2441
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00160.12genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof39.41.3e-1244792560
                                   zf-Dof 25 slsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                                             ++sqPr+ C++C r  t+GG+lrnv +Gg + k+++
  evm_27.model.AmTr_v1.0_scaffold00160.12 44 NMSQPRHSCRTCCRSLTNGGTLRNVQLGGNSCKRNR 79
                                             89**************************97666544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-63376IPR003851Zinc finger, Dof-type
PfamPF027011.6E-94378IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEQEIGDAAY ILGSPSLFLQ DPEEKSRYKK APLECPGGDS FDTNMSQPRH SCRTCCRSLT  60
NGGTLRNVQL GGNSCKRNRP AEMTTNTTSA HIETIFSQPA PTIHSIAPSS GFGSSCYAFE  120
QVNGYDGSRD QQFMGSESLS HAVNFVGEFG SSFAKHCLPQ LGAGLNEMMQ HELTSGWCGE  180
RVLAWFDEGV MERGPSPDFG SLTHYFTYP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1PSZ91e-156W1PSZ9_AMBTC; Uncharacterized protein
STRINGERN109791e-156(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38000.15e-10DNA binding with one finger 4.7
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]