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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00159.32 |
| Common Name | AMTR_s00159p00081760 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
bZIP |
| Protein Properties |
Length: 272aa MW: 29517.2 Da PI: 6.3416 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00159.32 | genome | TAGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 32.7 | 1.6e-10 | 101 | 138 | 13 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
NReA r++R++Kka ++ Lee+vk+L a N++L +l+
evm_27.model.AmTr_v1.0_scaffold00159.32 101 NREAVRKYREKKKAHTAYLEEEVKKLRALNQQLLRTLQ 138
*********************************98886 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0042538 | Biological Process | hyperosmotic salinity response |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MDDGEVELSS EHVFLCNSDD YPMESMLDAL MSKSKKKNMS EKNRITKDSS ARTCTHTHTC 60
NPPGPDSTHT HTCYHTHTTQ LFSPNEEPSN SPSKPNKTSG NREAVRKYRE KKKAHTAYLE 120
EEVKKLRALN QQLLRTLQGQ AMLEAEVVRL RTILMDLRGK IDGELGVSPF QRASTICGSG 180
FKEGNCSLGS IHGVGEVGLN LVGCGDDVPP CLHPQGKVME NCEPPIISCQ LANSDIASRA 240
FSSAETQLDS LIPANEMGIS GSLVASISQA E*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
| Publications
? help Back to Top |
- Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323] - Azevedo H, et al.
Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
Genom Data, 2016. 7: p. 256-8
[PMID:26981422] - Castro PH, et al.
Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
Sci Rep, 2017. 7(1): p. 3806
[PMID:28630437] - Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
F-group bZIPs in barley-a role in Zn deficiency.
Plant Cell Environ., 2017. 40(11): p. 2754-2770
[PMID:28763829] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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