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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00149.55 |
| Common Name | AMTR_s00149p00075900, LOC18437439 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
LSD |
| Protein Properties |
Length: 144aa MW: 14916.4 Da PI: 7.7285 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00149.55 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 42.3 | 1.2e-13 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL YP GA+sV+Ca+C++V
evm_27.model.AmTr_v1.0_scaffold00149.55 27 CSGCRNLLLYPVGATSVCCAVCNAV 51
************************9 PP
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| 2 | zf-LSD1 | 46.5 | 5.8e-15 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+tlL+Y rGA+sV+C++C+t+
evm_27.model.AmTr_v1.0_scaffold00149.55 66 CGGCHTLLMYIRGATSVQCSCCHTI 90
***********************97 PP
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| 3 | zf-LSD1 | 40.9 | 3.4e-13 | 104 | 128 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+C+ lL+Y +GA+sV+Ca+C++V
evm_27.model.AmTr_v1.0_scaffold00149.55 104 CGNCQMLLMYQYGARSVKCAVCNFV 128
***********************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009814 | Biological Process | defense response, incompatible interaction |
| GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response |
| GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response |
| GO:0045595 | Biological Process | regulation of cell differentiation |
| GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
| Sequence ? help Back to Top |
| Protein Sequence Length: 144 aa
Download sequence Send
to blast |
MPVPLAPYPT PPVPFTAPNG TQGQLVCSGC RNLLLYPVGA TSVCCAVCNA VTAVPPPGTE 60
MAQLICGGCH TLLMYIRGAT SVQCSCCHTI NLALEANQVA HVNCGNCQML LMYQYGARSV 120
KCAVCNFVTS VGASPSSEQK FTN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
