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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00119.73 |
| Common Name | AMTR_s00119p00095480, LOC18425201 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
G2-like |
| Protein Properties |
Length: 413aa MW: 45468.8 Da PI: 7.6364 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00119.73 | genome | TAGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 105.9 | 2.2e-33 | 42 | 96 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprl+WtpeLHerFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl
evm_27.model.AmTr_v1.0_scaffold00119.73 42 KPRLKWTPELHERFVEAVAQLGGADKATPKNVMRVMGIPGLTLYHLKSHLQKYRL 96
79****************************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 413 aa
Download sequence Send
to blast |
MYYQGKNCFS SSRATMPPER PLLLHGANIQ GDPGLVLSTD AKPRLKWTPE LHERFVEAVA 60
QLGGADKATP KNVMRVMGIP GLTLYHLKSH LQKYRLSKNL RSQSNGSDKN GPAAAAERMS 120
HTNGPHMGMA NMAVSGTNKG LQINEALQMH IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQS 180
VLEKAQETLA KQNPGSSGLE ATRAQISELV SQVSAECLNS AFSGLTEAPS LNNQQAQKSH 240
LADCSMDSCL TSCEGPQKDQ ETQNISIGLG YHSNSLLWQK AEREEFRVQR PNHSTGESLK 300
DTKHYSPSPE RKMHLLTSSF GDTINNVRAP GDKGACSTNS DARRKERGFE GACGEPPRKR 360
SVASRTQALD IEQTEVFDRL SNHTAVLDLN AHDENDASSE CKEFDLNGFS WS*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4r_A | 3e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 3e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 3e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 3e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP78 | 17 | 262 |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
Plant Sci., 2017. 263: p. 219-225
[PMID:28818378]
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