PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00109.112

Common Name

AMTR_s00109p00114170, LOC18426680

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

bHLH

Protein Properties

Length: 322aa MW: 35682.8 Da PI: 6.099

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00109.112	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.00038	197	235	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq evm_27.model.AmTr_v1.0_scaffold00109.112 197 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 235 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.693	185	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.24E-10	195	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.20E-6	195	239	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-7	199	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MNRLQSFPVQ QIMTGNPNRW NINAGGEDER KTIFQGINGS SMAAPYPPLT SLLESQEFPE 60 SWSQLLSSDL AREEDRCNYN QFFGKKMDNF ESQMLLSSSN SSLLNIKQEN IENCYGFPRR 120 NEDFQATKPS WPQNFPVNSS RSIVASFGNN ILDFSSSKRD GGQKPNENIS ECNSTAVAGS 180 SMKKPRVQTP STQFKVRKEK LGDRITALHQ LVSPFGKTDT ASVLLEAIGY IRFLQEQIEA 240 LSSPYLVRGS QVRGGCRFPE DPGQLLNESS KKRRGANDQD AEDEPKDLRS RGLCLVPLSC 300 TLPVSSDNGA DYWAPTLGSG F*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	197	KKPRVQTPSTQFKVRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006833385.1	0.0	transcription factor bHLH68 isoform X1
Swissprot	Q8S3D1	9e-69	BH068_ARATH; Transcription factor bHLH68
TrEMBL	W1NSL6	0.0	W1NSL6_AMBTC; Uncharacterized protein
STRING	ERM98663	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3780	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-69	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00109.112
Entrez Gene	18426680

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]