PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00106.94 | ||||||||
Common Name | AMTR_s00106p00123580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | C2H2 | ||||||||
Protein Properties | Length: 221aa MW: 24437 Da PI: 6.8716 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.0003 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+ksF++ L H+ H evm_27.model.AmTr_v1.0_scaffold00106.94 136 HRCDLCSKSFTSGQALGGHMTIH 158 79*****************9988 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00019 | 180 | 201 | 1 | 22 |
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 y+C C+k+F+++ L H+ evm_27.model.AmTr_v1.0_scaffold00106.94 180 YECMVCKKRFKSSQALGGHMGA 201 99**************999965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.11E-9 | 136 | 202 | No hit | No description |
SMART | SM00355 | 0.022 | 136 | 158 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.6E-4 | 136 | 159 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 5.8E-11 | 136 | 160 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.596 | 136 | 163 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 138 | 158 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.0E-6 | 166 | 204 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.033 | 180 | 202 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-7 | 180 | 202 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.014 | 180 | 207 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 182 | 202 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MARPCSYNSH GLADPLDLED HLCSDQPIEP LSLTLSLSPY QPNPTTTTIH HLSSYQDNRT 60 ASQPISTSLT LSVPQHDSSY LSLSTCSSTC EQYSGNHTQD LEDVGERNPI THDFGIGDTQ 120 DSQNSNNHVQ EFSNGHRCDL CSKSFTSGQA LGGHMTIHRK VLPKMHSKEK KRESNGERFY 180 ECMVCKKRFK SSQALGGHMG AHTSPFNTEA SSPKRFFTFL * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W1NZM0 | 1e-162 | W1NZM0_AMBTC; Uncharacterized protein | ||||
STRING | ERN00746 | 1e-163 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 2e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00106.94 |
Publications ? help Back to Top | |||
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