PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00106.58 | ||||||||
Common Name | AMTR_s00106p00088880, LOC18428780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | C2H2 | ||||||||
Protein Properties | Length: 371aa MW: 40034.7 Da PI: 8.4809 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k+F + L H+r+H evm_27.model.AmTr_v1.0_scaffold00106.58 6 HTCKHCSKTFATFTALGGHMRSH 28 79********************9 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0016 | 293 | 315 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F + L H r+H evm_27.model.AmTr_v1.0_scaffold00106.58 293 HQCPYCYRVFGSGQALGGHKRSH 315 79**************9999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.29E-9 | 5 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.0E-4 | 5 | 29 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.866 | 6 | 33 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.0E-9 | 6 | 29 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0088 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.29E-9 | 156 | 183 | No hit | No description |
PROSITE profile | PS50157 | 9.452 | 161 | 188 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.9E-10 | 161 | 185 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.26 | 161 | 183 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 163 | 183 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.182 | 293 | 320 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.4E-12 | 293 | 315 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 293 | 315 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 295 | 315 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MDPTPHTCKH CSKTFATFTA LGGHMRSHST TSTITTTTNT NPNPLPLSYS LRNNPKKTRP 60 FVLYDSQTFT PRRNSHPPKN SGRKSGQIPC NSGDTDTEIS SSISDAASVE ENVAVSLMLL 120 SRGMYDNPNS PKNRFSGEFS GVVLPDSGVC ESSEPSKKSK FECSACKKIF KSYQALGGHR 180 ARHMRIKGIS ATSMENGELL GCLNNQEIEE GKIESSATTM ENGEFWGFSN KGESSKEIKK 240 IEGSPATTME SGAILGTPNN QKAQGNRRKI DSLSATAMEN GRISGFPNKT KIHQCPYCYR 300 VFGSGQALGG HKRSHGASAK LGLKPPSEAE SVLDLNKPAP VNEVEGDAIS RIEVMGEEDE 360 VGSSSFWRDQ * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006838141.1 | 0.0 | zinc finger protein ZAT1 | ||||
TrEMBL | W1P199 | 0.0 | W1P199_AMBTC; Uncharacterized protein | ||||
STRING | ERN00710 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 3e-12 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00106.58 |
Entrez Gene | 18428780 |
Publications ? help Back to Top | |||
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