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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00099.135 |
| Common Name | AMTR_s00099p00149290, LOC18427819 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
DBB |
| Protein Properties |
Length: 187aa MW: 20837.3 Da PI: 6.7033 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00099.135 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 22.2 | 2.9e-07 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
C+ +e+ e+ C ++ lC +C ++ H H++vpl
evm_27.model.AmTr_v1.0_scaffold00099.135 4 QCDVCEKAEAAVLCCADEAALCWSCDETVHAAnklaskHQRVPL 47
7*****************************66899999999986 PP
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| 2 | zf-B_box | 29.7 | 1.3e-09 | 55 | 89 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkgH 37
++kC+ ++ek +fC +++ llC++C +++H H
evm_27.model.AmTr_v1.0_scaffold00099.135 55 ANPKCDICQEKSGFFFCLEDRALLCRQCDVSIH-TH 89
589*****************************9.65 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 187 aa
Download sequence Send
to blast |
MKIQCDVCEK AEAAVLCCAD EAALCWSCDE TVHAANKLAS KHQRVPLLLN SSHHANPKCD 60
ICQEKSGFFF CLEDRALLCR QCDVSIHTHS PYVSSHQRFL LTGVKVGLNH HTSPTPQDSK 120
NENLPNSALP RDQAAGVRPQ WPLDEIFSFP DFDHLDTLSD CGSSQISTRA NNHHHQNHPF 180
LHHQQN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
