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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00094.1 |
| Common Name | AMTR_s00094p00028710, LOC18426326 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
G2-like |
| Protein Properties |
Length: 298aa MW: 33349.8 Da PI: 7.7023 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00094.1 | genome | TAGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 106.2 | 1.9e-33 | 32 | 86 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprlrWt eLH+rFv+av+qLGG++kAtPk+i+++m+vkgLtl+h+kSHLQk+Rl
evm_27.model.AmTr_v1.0_scaffold00094.1 32 KPRLRWTVELHDRFVDAVTQLGGPDKATPKSIMRVMGVKGLTLYHLKSHLQKFRL 86
79****************************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 298 aa
Download sequence Send
to blast |
MFHPKKPPNM CSQERQMCVQ GDSGLVLTTD PKPRLRWTVE LHDRFVDAVT QLGGPDKATP 60
KSIMRVMGVK GLTLYHLKSH LQKFRLGKQP HKEFNDHSSK ESERAAVLEL QRSGASSSGI 120
MGRDGNDNMQ VREAVRMQME VQRRFTEQLE VQKHLQLRIE AQGKYMQNIL EKAFQTIAGE 180
TMTSGSLKAG GSSHQGLLDL GASCMNYPCL QDLHIYGGDQ NPHHHQLELQ SGGQIDSAFM 240
SSQEDTQEEF DGAFETKPLQ VMEGDCSINK KFEMRAPSNH MSMPRPITPS ARNHSYG*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4r_A | 2e-18 | 32 | 88 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 2e-18 | 32 | 88 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 2e-18 | 32 | 88 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 2e-18 | 32 | 88 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP78 | 17 | 262 |
| Publications
? help Back to Top |
- Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
Vascular gene expression: a hypothesis.
Front Plant Sci, 2013. 4: p. 261
[PMID:23882276] - Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kondo Y, et al.
Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
Plant Cell, 2016. 28(6): p. 1250-62
[PMID:27194709] - Shibuta M,Abe M
FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
Plant Cell Physiol., 2017. 58(11): p. 2017-2025
[PMID:29036620]
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