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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm_27.model.AmTr_v1.0_scaffold00092.107 |
| Common Name | AMTR_s00092p00140740, LOC18427282 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
LSD |
| Protein Properties |
Length: 176aa MW: 18481.6 Da PI: 8.4354 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00092.107 | genome | TAGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 40.5 | 4.4e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr +L YPrGA++V+Ca+C+t+
evm_27.model.AmTr_v1.0_scaffold00092.107 7 CSGCRSTLLYPRGATNVCCAVCNTI 31
***********************97 PP
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| 2 | zf-LSD1 | 47.7 | 2.5e-15 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCr+lL+Y+rGA+sVRC++C+t+
evm_27.model.AmTr_v1.0_scaffold00092.107 46 CGGCRKLLMYTRGASSVRCSCCHTI 70
***********************97 PP
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| 3 | zf-LSD1 | 42.1 | 1.4e-13 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg C+++L+YP+G+psV+Ca+C+ V
evm_27.model.AmTr_v1.0_scaffold00092.107 84 CGRCHVTLMYPYGSPSVKCAVCQYV 108
***********************87 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000303 | Biological Process | response to superoxide |
| GO:0001666 | Biological Process | response to hypoxia |
| GO:0002240 | Biological Process | response to molecule of oomycetes origin |
| GO:0009626 | Biological Process | plant-type hypersensitive response |
| GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway |
| GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway |
| GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process |
| GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process |
| GO:0010618 | Biological Process | aerenchyma formation |
| GO:0043069 | Biological Process | negative regulation of programmed cell death |
| Sequence ? help Back to Top |
| Protein Sequence Length: 176 aa
Download sequence Send
to blast |
MQSQLVCSGC RSTLLYPRGA TNVCCAVCNT ITPAPPPGME MAQLICGGCR KLLMYTRGAS 60
SVRCSCCHTI NIAREAYPVA HVSCGRCHVT LMYPYGSPSV KCAVCQYVTN VGMSNMQVPM 120
PVNGPNGYMP AHSPSTSTSM PHAPSQTVVV ENPMSMDDSG KLVSNIVVGV TTGKK*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323] - Wu J, et al.
OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
Plant J., 2014. 80(6): p. 1118-30
[PMID:25353370]
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