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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm_27.model.AmTr_v1.0_scaffold00088.132 |
Common Name | AMTR_s00088p00161000, LOC18427652 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
GRAS |
Protein Properties |
Length: 559aa MW: 62194.6 Da PI: 6.2018 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00088.132 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 457 | 1.2e-139 | 189 | 558 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70
+++L++cA+a+s++d+ +a++l+++l++++s +g+p+qRl ay++e+L ar+a+s+s +yk+l++++
evm_27.model.AmTr_v1.0_scaffold00088.132 189 RKALVACAKAISDNDMPMADWLITELRQMVSVSGEPIQRLGAYMVEGLVARIASSGSAIYKSLRCKQPL 257
789*****************************************************************8 PP
GRAS 71 eknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegp 139
s+ l+++++++ev+P++kf++l aN aI ea++ge+rvHiiDf+i qG+QW++L+qaLa+Rp+gp
evm_27.model.AmTr_v1.0_scaffold00088.132 258 ---ASDLLSYMHVLYEVCPYFKFGYLSANGAIAEALKGEDRVHIIDFQIAQGTQWVTLIQALAARPGGP 323
...99**************************************************************** PP
GRAS 140 pslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206
p lRiTgv++p s + le +g+rLak+A+ ++vpfefn+ +a +++e+ +L+v+p++alaVn+
evm_27.model.AmTr_v1.0_scaffold00088.132 324 PYLRITGVDDPVSAyaRGCGLELVGQRLAKLAKLCNVPFEFNA-AAICGSQVEVGMLKVRPNDALAVNF 391
***********999889999***********************.899********************** PP
GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
+qlh+++desvs+ ++rd++L+++ksl+Pkvv++veqe+++n+++Fl+rf+e l+yysa+f+s++++l
evm_27.model.AmTr_v1.0_scaffold00088.132 392 PFQLHHMPDESVSTVNHRDRLLRMIKSLNPKVVTLVEQESNTNTAPFLHRFVEVLSYYSAVFESIDVTL 460
********************************************************************* PP
GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
pr+s+eri+vE+++l+r+ivnv+aceg+er+erhe l+kW+ r+++aGF+p+pls+++++++k+ll+ +
evm_27.model.AmTr_v1.0_scaffold00088.132 461 PRDSKERISVEQHCLARDIVNVIACEGQERVERHELLGKWKLRFMMAGFSPYPLSSSVNSTIKSLLEGY 529
********************************************************************* PP
GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++ yr+ee++g l+lgWk+r Lv+ +aWr
evm_27.model.AmTr_v1.0_scaffold00088.132 530 CEN-YRLEEKDGVLYLGWKNRVLVASCAWR 558
*55.*************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 559 aa
Download sequence Send
to blast |
MDSQFRSEHI SSRKNLQYFL STPRDPENHQ MVQSSMINGQ NQGRESYQPL DYLFSEGCQG 60 KINLSTQSSQ GPSYATLESS PQNLGHSLYS SPSTLSFSPN ESPLSQQDSQ TYPLELPHSP 120 EHFYGSPRSG SCITEEPNDF KNKLRELETA MLGPNSDGGD SFEASVQNQV SLEPDKWPQM 180 VDILRGGIRK ALVACAKAIS DNDMPMADWL ITELRQMVSV SGEPIQRLGA YMVEGLVARI 240 ASSGSAIYKS LRCKQPLASD LLSYMHVLYE VCPYFKFGYL SANGAIAEAL KGEDRVHIID 300 FQIAQGTQWV TLIQALAARP GGPPYLRITG VDDPVSAYAR GCGLELVGQR LAKLAKLCNV 360 PFEFNAAAIC GSQVEVGMLK VRPNDALAVN FPFQLHHMPD ESVSTVNHRD RLLRMIKSLN 420 PKVVTLVEQE SNTNTAPFLH RFVEVLSYYS AVFESIDVTL PRDSKERISV EQHCLARDIV 480 NVIACEGQER VERHELLGKW KLRFMMAGFS PYPLSSSVNS TIKSLLEGYC ENYRLEEKDG 540 VLYLGWKNRV LVASCAWR*
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Functional Description ? help
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Source |
Description |
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Day RB, et al.
Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627] - Amborella Genome Project
The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] - Tanabe S, et al.
The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23. Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51 [PMID:26287768]
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