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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm_27.model.AmTr_v1.0_scaffold00077.51 |
| Common Name | AMTR_s00077p00070990 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
bZIP |
| Protein Properties |
Length: 357aa MW: 39490.8 Da PI: 5.9421 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00077.51 | genome | TAGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 31.1 | 5e-10 | 162 | 211 | 5 | 54 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54
kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l +
evm_27.model.AmTr_v1.0_scaffold00077.51 162 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQR 211
9****************************************998876655 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MKEEDEEENR EPCVSPMQDH QGVPISSSSL STSQSTHASS MSLSLSRGTH RRAHSELSLP 60
LPHDLQTRVP NSSECDDEEE EEDFFSTYMD LEKLGPVQGE AKCSEISGFP ANAGSFKPEM 120
GRRGHRHSNS VDGSALFGEV GTEVKKAMPP EKLAELAALD PKRAKRILAN RQSAARSKER 180
KARYISELER KVQTLQTEAT TLSAQLTLFQ RDTNGLSTEN TMLKQQLQEM ERQAQVRDAL 240
NEALRQEVQR LKIATGEITP NGRENFNLGM QQMPTNHPPF FPNSHPSSIH PVQFQQFQPS 300
QQPSLSNHHQ LRALSLSDIL QQDSLGLMQG LDISRSSPLV KSEGSSVSAS ESSSTF*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Dai S,Zhang Z,Bick J,Beachy RN
Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
[PMID:16476995] - Liu Y,Dai S,Beachy RN
Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
Biochem. J., 2007. 405(2): p. 243-9
[PMID:17371296] - Dai S, et al.
Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
[PMID:19104064] - Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323]
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