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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00063.48 |
| Common Name | AMTR_s00063p00161200, LOC18444571 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
SRS |
| Protein Properties |
Length: 275aa MW: 28430.4 Da PI: 8.4144 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00063.48 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 197.3 | 4.9e-61 | 72 | 230 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaask 73
gt++CqdCGnqakkdC h+RCRtCCksrg+dCathvkstWvpaa+rrer+ ++a + + a a k
evm_27.model.AmTr_v1.0_scaffold00063.48 72 GTTTCQDCGNQAKKDCLHRRCRTCCKSRGYDCATHVKSTWVPAARRRERHMAAAVTGEGA---AGVGGGK 138
789*********************************************966555544433...3455566 PP
DUF702 74 rkrelkskkqsalsstklssaeskkeletss.............lPeevsseavfrcvrvssvdd.geee 129
++r ++++ +s+t++s ++++++++t s lP++v+++avf+cvrvss++d ge+e
evm_27.model.AmTr_v1.0_scaffold00063.48 139 KPRLA--ASSQGTSHTSTSANTPPRSFDTGSshqdvnystgsgsLPSRVRAPAVFKCVRVSSIEDdGEDE 206
66654..4444455556666666777766666677778888888*******************9879*** PP
DUF702 130 laYqtavsigGhvfkGiLydqGle 153
+aYq++v+igG +fkG+Lyd+G++
evm_27.model.AmTr_v1.0_scaffold00063.48 207 YAYQAVVKIGGRIFKGVLYDHGAA 230
**********************86 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MVLLNSPFHD PTSAPSGPAG GPPYSHHHQP GAALGMIPLL TAGPHHQLVP EHSHSQGPER 60
RGGESSGSTV GGTTTCQDCG NQAKKDCLHR RCRTCCKSRG YDCATHVKST WVPAARRRER 120
HMAAAVTGEG AAGVGGGKKP RLAASSQGTS HTSTSANTPP RSFDTGSSHQ DVNYSTGSGS 180
LPSRVRAPAV FKCVRVSSIE DDGEDEYAYQ AVVKIGGRIF KGVLYDHGAA TAASSSSREN 240
LPNLSDLHLG GSSTPVMDAA ALLEGTSYGN PPIN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 1e-57 | Lateral root primordium (LRP) protein-related |
