PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

G2-like

Protein Properties

Length: 331aa MW: 35720.1 Da PI: 6.9516

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00061.72	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.4e-34	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl evm_27.model.AmTr_v1.0_scaffold00061.72 46 RQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 100 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.015	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-32	45	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-18	45	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-25	47	101	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-24	132	178	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MYHPKNISST TLVPTKPSSR DPQIDNAKMA ANSGGNPVNN SNMASRQRLR WTNELHERFV 60 DAVAQLGGPD RATPKGVLRV MGVQGLTIYH VKSHLQKYRL AKYLPESSSD GTKPDRKESA 120 DMLSNLDAAS GMQITEALRM QMEVQKRLHE QLEVQRQLQL RIEAQGKYLQ KIIEEQQRLS 180 GVLAGTPAIV PESGDHMPEP DAKTDPATPA VTSEAPLKDE PTKTKCLVAK SFSQEESFSS 240 RHEPPTPDSG SPGSSPCAER PVKKQRGLEP SGLGGLGHPI LESSSGSVFR QADMCSAYSS 300 LEGVSGRFDS LGSVSLCERE GFGDASGAEL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-23	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-23	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-23	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-23	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006857596.1	0.0	myb family transcription factor PHL7
Refseq	XP_020531137.1	0.0	myb family transcription factor PHL7
Swissprot	Q9SJW0	1e-111	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	U5DF83	0.0	U5DF83_AMBTC; Uncharacterized protein
STRING	ERN19063	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-89	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00061.72
Entrez Gene	18447437

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]