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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm_27.model.AmTr_v1.0_scaffold00059.65 |
Common Name | AMTR_s00059p00091580, LOC18445865 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
GRAS |
Protein Properties |
Length: 500aa MW: 53920.6 Da PI: 5.9899 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00059.65 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 260.9 | 4.4e-80 | 158 | 497 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetse 71
e+L+++A+ ++ g+ ++aqa+Larl+++ + g+p qR+ + f+eAL l + +p + +
evm_27.model.AmTr_v1.0_scaffold00059.65 158 EQLVRVAQSLEGGNVAMAQAILARLNHTlPPSVGRPHQRALFQFKEALCGLLGP------H--APAPMLP 219
79*************************9566667****************9999......3..3333334 PP
GRAS 72 knsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpps 141
+ ++++ a+k+fse+ P+ +fs++taNqa+lea+eg+ +v +iD+d++ G+QW++L+q+La Rp+gpp
evm_27.model.AmTr_v1.0_scaffold00059.65 220 LDIVHKIGAYKAFSEAIPLTQFSNFTANQALLEAFEGAPAVWVIDLDMGLGGQWASLMQELAHRPGGPPA 289
469******************************************************************* PP
GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlh 211
+R+T++g+ e+ +e+L++fA+elg+ fefn+ + le L ++gEa+ V + +
evm_27.model.AmTr_v1.0_scaffold00059.65 290 MRLTAIGE----LGFEMGLARENLRHFARELGLVFEFNI-------ASGLEGLCASNGEAIGVMVGAGMP 348
********....99************************9.......3456889999*******9988665 PP
GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
v + v++l P+vv vve e + ++s+ +r+++ ++yy++l++slea+ + +
evm_27.model.AmTr_v1.0_scaffold00059.65 349 PSS-----------PVARSVRRLGPRVVAVVEAENGRAEASLSRRLTRGIQYYTSLMESLEAS-AIGNVV 406
553...........47789*******************************************9.688999 PP
GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
++ +Er ++++ i+ v + + ++ ++Wre++ aGF+ + l++++++qa++l+++++++g++v
evm_27.model.AmTr_v1.0_scaffold00059.65 407 ERGIERLIMRPGIEASVVGAPR--STCGTSTASWREAMAGAGFSVAGLTNFTETQAQCLVERTQVRGFHV 474
999************9986555..5888889*************************************** PP
GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
e++ ++lvl+W++rpLv++SaWr
evm_27.model.AmTr_v1.0_scaffold00059.65 475 EKRGAALVLCWQRRPLVAASAWR 497
**********************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0030154 | Biological Process | cell differentiation |
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
Protein Sequence Length: 500 aa
Download sequence Send
to blast |
MNPLLSIAQH HQAHPPHPAC APALEPTSVL DLRSSPTPAP PLWAQQQPPP MEEWDSLLLD 60 EPSLMRWIMG GEIDETGNPS SLSRPQFAST EPAPVEPVYP IDPFSFPSIE PTATFSSLPF 120 VAANNPHFDQ FGFEREQVYS GHHHQSGGLV ANDEWWLEQL VRVAQSLEGG NVAMAQAILA 180 RLNHTLPPSV GRPHQRALFQ FKEALCGLLG PHAPAPMLPL DIVHKIGAYK AFSEAIPLTQ 240 FSNFTANQAL LEAFEGAPAV WVIDLDMGLG GQWASLMQEL AHRPGGPPAM RLTAIGELGF 300 EMGLARENLR HFARELGLVF EFNIASGLEG LCASNGEAIG VMVGAGMPPS SPVARSVRRL 360 GPRVVAVVEA ENGRAEASLS RRLTRGIQYY TSLMESLEAS AIGNVVERGI ERLIMRPGIE 420 ASVVGAPRST CGTSTASWRE AMAGAGFSVA GLTNFTETQA QCLVERTQVR GFHVEKRGAA 480 LVLCWQRRPL VAASAWRCC*
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