PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00059.1
Common NameAMTR_s00059p00004030
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 59aa    MW: 6799.75 Da    PI: 7.564
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00059.1genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.4e-063858323
                                            ETTTTEEESSHHHHHHHHHHT CS
                                 zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                            C  Cg +F+ + +Lk+H + H
  evm_27.model.AmTr_v1.0_scaffold00059.1 38 CDECGACFRKPAHLKQHKQGH 58
                                            *****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.1773658IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-53758IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
SKKSLIRSHM LSEHKDEVNE VEKDEEEILE NKRMKLACDE CGACFRKPAH LKQHKQGH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011628585.11e-28transcription factor IIIA
RefseqXP_020531805.11e-28transcription factor IIIA isoform X2
TrEMBLU5CVV32e-33U5CVV3_AMBTC; Uncharacterized protein (Fragment)
STRINGERN174563e-34(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29811627
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]