PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00056.223
Common NameAMTR_s00056p00222190
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family HRT-like
Protein Properties Length: 317aa    MW: 35467.1 Da    PI: 8.1566
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00056.223genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like28.82e-092632781631
                                  HRT-like  16 PvkgRKRCeeHKGmRi 31 
                                               Pv+gRKRC eHKGmR+
  evm_27.model.AmTr_v1.0_scaffold00056.223 263 PVEGRKRCSEHKGMRV 278
                                               ***************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVFGSETHRI RREEQSRTKL DHLFSKWEIL IGPSDWGNYL LGKEGTEKYR IHNLPLSSSC  60
PGIYELGVAP ISTGLGRTIR KIDPSAIVVA YIGHADNVRT RLQHYGRSGS HLELVDPFVL  120
PDNGKPSEPV TTTNQCLEKR PGLFREAFSR GFYIVFRWAP MTTKREAGLA ESRLLSNFDY  180
AWNKGANGAR RPADILAKLD RTHSQSALLA CLSRKLGHLK WNGITKKCIG IDINAGKLED  240
EGSSGTITFE VSDTCEKESR GCPVEGRKRC SEHKGMRVNA SKLEDEGSYV SAERHFESCY  300
WLEESPCAFQ IMEETN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011626787.10.0protein EFFECTOR OF TRANSCRIPTION 2
RefseqXP_020528740.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLU5D4J10.0U5D4J1_AMBTC; Uncharacterized protein
STRINGERN152730.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP52481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.14e-59effector of transcription2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]