PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00055.166
Common NameAMTR_s00055p00218640
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family E2F/DP
Protein Properties Length: 431aa    MW: 49551.3 Da    PI: 6.516
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00055.166genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.13.5e-241782171
                                   E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                                              rk+ksL+ll+ +fl l+++ +++ ++l+e+a++L    v  +rRRiYDi+NVLe+++++++k+kn+++w+g
  evm_27.model.AmTr_v1.0_scaffold00055.166 17 RKQKSLGLLCVNFLGLYNRDDTESIELDEAATRL---GV--ERRRIYDIVNVLESVGVLARKAKNQYKWIG 82
                                              79********************************...**..****************************98 PP
2E2F_TDP37.44.1e-121431784171
                                   E2F_TDP  41 nkrRRiYDilNVLealnliek.....kekneirwkg 71 
                                                k RR+YDi+NVL+++nliek     ++k+++rw g
  evm_27.model.AmTr_v1.0_scaffold00055.166 143 AKMRRLYDIANVLSSMNLIEKthqpeNRKPAFRWLG 178
                                               588******************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-261383IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.74E-171681IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.2E-291782IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.9E-211882IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM013722.4E-688178IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.6E-13135180IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.5E-10139178IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.22E-8142179IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MTTSSSSFAQ RDHTYSRKQK SLGLLCVNFL GLYNRDDTES IELDEAATRL GVERRRIYDI  60
VNVLESVGVL ARKAKNQYKW IGMGGIPGAL ECLREDALKG NPDSNYAISS DDVKDFDDDE  120
DEESLSQKKS DPSETATSKP KQAKMRRLYD IANVLSSMNL IEKTHQPENR KPAFRWLGLK  180
GGTENKVESS CFNLSEREIK KREFGSDITN IDFKKNRIET FVQQPINALH ETGVCVPRKD  240
LNWKPQKEVP HAQHSYDHPH LQQSKQEQKQ QFRLQQHQQP LQQQEGKQQQ LQSGHQQKEQ  300
QQDQEQQQNT KGVVFGPFAP ACLPRENQND VKKTQDWMKL ATSYRPQYHN QGLSNVFGHY  360
LEAWKSWYEQ YMLHGNNGDF EDGVIEIPMV FASHLELEPL VACAREFEDN AAQDGIAQTL  420
RMMELHKRVE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-151694385Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020530688.10.0E2F transcription factor-like E2FE isoform X1
TrEMBLU5CYF50.0U5CYF5_AMBTC; Uncharacterized protein
STRINGERN183760.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24741634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.15e-49DP-E2F-like protein 3
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]