PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00044.255
Common NameAMTR_s00044p00233260, LOC18445621
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 395aa    MW: 44443.7 Da    PI: 10.0106
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00044.255genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-16453148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                                              r+rW +eEd ll  +vkq+G++ W++++++mg  ++R +k+c +rw +yl
  evm_27.model.AmTr_v1.0_scaffold00044.255  4 RQRWQPEEDALLRAYVKQYGPKEWNLVSQRMGrpLHRDAKSCLERWKNYL 53
                                              89**********************************************97 PP
2Myb_DNA-binding34.16.5e-1159103147
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                               +g+ ++eE+ l v + +++G++ Wk+Ia++++ gRt+k +  +w  +
  evm_27.model.AmTr_v1.0_scaffold00044.255  59 KGSLSQEEQALVVALQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103
                                               57789*****************.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.615157IPR017930Myb domain
SMARTSM007179.1E-14355IPR001005SANT/Myb domain
SuperFamilySSF466894.69E-21498IPR009057Homeodomain-like
CDDcd001672.04E-8653No hitNo description
Gene3DG3DSA:1.10.10.603.2E-20659IPR009057Homeodomain-like
PfamPF139211.6E-14768No hitNo description
SMARTSM007171.8E-958106IPR001005SANT/Myb domain
PROSITE profilePS5129417.82358108IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-1460102IPR009057Homeodomain-like
CDDcd001671.33E-563104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MKERQRWQPE EDALLRAYVK QYGPKEWNLV SQRMGRPLHR DAKSCLERWK NYLKPGIKKG  60
SLSQEEQALV VALQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQAKD KQRRLQQNHH  120
HHHHHQQHSS SISSQQPPVG LSSDSSSVPV SGRYDHILET FAEKYAQQAK SCCLPPPPPP  180
PLLSDPTPLL SLNSAGTTTQ RAPAATETPA LLPSLPPWLS AAGGLKNFGA VPSVSPPPPP  240
PPPPPSVSLS LSPTSVATEC TMQAAASGVV QQLAQWCREV EEGRQAWVQQ KKEAAWRVRR  300
VEQQLESEKS RKRREKMEEV EAKIRRLREE EAAFVDRLEA DCREQLAAVQ RDAEMKEVKL  360
MEQWAAKHLK LATFVEHLSS QHPSSSCFLK DSLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-14792789MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-14792789C-Myb DNA-Binding Domain
1msf_C5e-14792789C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310315RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855819.10.0protein rough sheath 2 homolog
TrEMBLU5CVC80.0U5CVC8_AMBTC; Uncharacterized protein
STRINGERN172860.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP50961421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.11e-60MYB family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]