PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00044.249 | ||||||||
Common Name | AMTR_s00044p00228020, LOC18445615 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | GRAS | ||||||||
Protein Properties | Length: 767aa MW: 83835.5 Da PI: 6.5433 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 278.2 | 2.5e-85 | 397 | 765 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppse 68 lv++Ll++Ae v++g++ a+a+Larl+++ sp g+p++R+a+yf++AL + l + + ++ + ++++ evm_27.model.AmTr_v1.0_scaffold00044.249 397 LVDQLLKAAELVEAGNAGPARAILARLNHQLSPLGNPLHRAAFYFKQALLSLLCNpQPPHQLSRSSSTP 465 6899**************************************************943344444444444 PP GRAS 69 tsekn........sseelaalklfsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWp 126 +s+++ ++++ a+k+fse++P+ +fs++t+Nqa+le+++ + + +HiiDf+i+ G+QW evm_27.model.AmTr_v1.0_scaffold00044.249 466 SSSSSfcsanpfeIVHKIGAFKAFSEIFPFSQFSNFTCNQALLESLDDAslsNPIHIIDFEIGFGGQWS 534 444447778888788888888**************************99888999************** PP GRAS 127 aLlqaLasRp.egpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 +++q+La + + pp l+iT+v++ ++++ e++ ++e+L +fA+ +++fef ++ ++e+l++ + evm_27.model.AmTr_v1.0_scaffold00044.249 535 SFMQELAVKLgSAPPiLLKITAVVP-SAHDPIEMSLVRENLYHFARDSNIHFEFGTV---HFESLDPTA 599 *******99954444799******9.77899*************************8...788888887 PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 + +Vn+ + hr + ++ ++L+lvk + Pk+vv +e +d+ ++sF+++fl +le evm_27.model.AmTr_v1.0_scaffold00044.249 600 F----VGGAVVNFPIGAHRSF-PGADFL----SLLRLVKAIHPKIVVSTELPCDRIDASFFQHFLLSLE 659 7....344689*********9.333444....6************************************ PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331 +s ++dsle+ + +k+Er++++++i++vv +++ e+l Wr + +aGF p++ls+ evm_27.model.AmTr_v1.0_scaffold00044.249 660 SFSIFLDSLESA-CLDPGVLAKIERFFVQPKIESVVLSRHR-----IEKLPPWRTLFASAGFAPITLSN 722 *********888.4677999****************98776.....5********************** PP GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++qa+ ++++v+++g++ve+++ lvl+W++++L+s+SaWr evm_27.model.AmTr_v1.0_scaffold00044.249 723 FTESQAQEIMKRVQVEGFHVEKRHSMLVLCWQNKELLSASAWR 765 ******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.82 | 371 | 745 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.8E-83 | 397 | 765 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 767 aa Download sequence Send to blast |
MKGMPYNLQS QGVQIQVTKD WRKPVAIVCS NSSSEPTSVL DLRRSPSPTS TSTLSSSLGG 60 GSVTPDPVPN SEASGSKREE WVSEFQAMEL PPSSSSAANT HSSHSNSNTK PCLNMEDWEA 120 MLMESASSPA HPIINSGDTG PGSSLMKWIM GEIEEPKLTH FDEPMETGFG DQVLASGFSF 180 PEPINPSLPA VSFPRPSNSP ILSPSSPVKN QNPNPPPNRP PPPFLSPPSP AKNIPPPSPA 240 PPFLSPPLPV KNNAPTSFPL QQSPPSCFSL QNAYLPASTA SANLVVPNPL FYQQQFQQLH 300 LQQMELPPQK MEMVEEKLQL PPHLQSQLFM NQGSGPNSPM GFQNSTTMPR QSPPFFHPLQ 360 SEMALVMNGK QRGACMRGMG GDREESPQQL QQHQLALVDQ LLKAAELVEA GNAGPARAIL 420 ARLNHQLSPL GNPLHRAAFY FKQALLSLLC NPQPPHQLSR SSSTPSSSSS FCSANPFEIV 480 HKIGAFKAFS EIFPFSQFSN FTCNQALLES LDDASLSNPI HIIDFEIGFG GQWSSFMQEL 540 AVKLGSAPPI LLKITAVVPS AHDPIEMSLV RENLYHFARD SNIHFEFGTV HFESLDPTAF 600 VGGAVVNFPI GAHRSFPGAD FLSLLRLVKA IHPKIVVSTE LPCDRIDASF FQHFLLSLES 660 FSIFLDSLES ACLDPGVLAK IERFFVQPKI ESVVLSRHRI EKLPPWRTLF ASAGFAPITL 720 SNFTESQAQE IMKRVQVEGF HVEKRHSMLV LCWQNKELLS ASAWRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-27 | 410 | 765 | 16 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006855813.1 | 0.0 | protein SCARECROW 1 | ||||
TrEMBL | U5D4Y0 | 0.0 | U5D4Y0_AMBTC; Uncharacterized protein | ||||
STRING | ERN17280 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1750 | 12 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 6e-78 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00044.249 |
Entrez Gene | 18445615 |
Publications ? help Back to Top | |||
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