PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00038.106 | ||||||||
Common Name | AMTR_s00038p00167360, LOC18442867 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bHLH | ||||||||
Protein Properties | Length: 186aa MW: 20689.9 Da PI: 8.9785 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.1 | 1.2e-11 | 13 | 65 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+++h e+Er+RR+++ + Lr+llP+ ++K s ++ +++A YI + q evm_27.model.AmTr_v1.0_scaffold00038.106 13 RKMSHREVERQRRHEMATLCVSLRSLLPHeY---LKGKRSISDQVTQASSYIAHKQ 65 799**************************77...9*****************9966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.395 | 12 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.8E-12 | 13 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-8 | 13 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.52E-7 | 13 | 69 | No hit | No description |
Pfam | PF00010 | 1.4E-8 | 13 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MANTPASPVS GCRKMSHREV ERQRRHEMAT LCVSLRSLLP HEYLKGKRSI SDQVTQASSY 60 IAHKQKKIRE LIEVRDDLRR GCECKHSVLP DISCGMVEKL EVRELGEGVE VVMGGLSREG 120 GRRCMSCLVG AMEESIGLDV VSCSSSSRGD QWFHVVQSTR KVSGGTEVDI REIKRKLVQA 180 LQRPL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006853139.1 | 1e-131 | transcription factor bHLH36 | ||||
TrEMBL | U5CN97 | 1e-130 | U5CN97_AMBTC; Uncharacterized protein | ||||
STRING | ERN14606 | 1e-130 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1638 | 8 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 4e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00038.106 |
Entrez Gene | 18442867 |
Publications ? help Back to Top | |||
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