PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

G2-like

Protein Properties

Length: 223aa MW: 25243.5 Da PI: 6.8967

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00026.77	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.6	6.9e-34	50	104	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWtp+LH+rFvea++qLGG+e+AtPk +l++m+v+gLt++hvkSHLQkYRl evm_27.model.AmTr_v1.0_scaffold00026.77 50 RQRLRWTPDLHDRFVEAITQLGGPERATPKGVLKIMGVQGLTIYHVKSHLQKYRL 104 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.783	47	107	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-32	48	105	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-17	48	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-25	51	105	IPR006447	Myb domain, plants
Pfam	PF00249	5.6E-9	52	103	IPR001005	SANT/Myb domain
Pfam	PF14379	3.6E-20	135	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MHEEIAFVNM LHEGEFSESS SVPQNAHRYL GLPSYSIRSN MASRGGPSTR QRLRWTPDLH 60 DRFVEAITQL GGPERATPKG VLKIMGVQGL TIYHVKSHLQ KYRLAKFIPE SIGGEKIDRN 120 DKEVDADQTA SSRLDIDEAL QMQIEVQKRL NEQAEVQRHL QLRMEAQARY IQKILEEQQQ 180 NEKPSSPTTE GKSLWEKDQV PLFPPLSSEE LSLPCGSPSK RT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-26	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-26	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-26	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-26	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006848821.1	1e-165	myb family transcription factor PHL7
Swissprot	Q9SJW0	4e-56	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	W1PK83	1e-163	W1PK83_AMBTC; Uncharacterized protein
STRING	ERN10402	1e-164	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-58	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00026.77
Entrez Gene	18438575

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]