PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.181
Common NameAMTR_s00025p00159760
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family HB-PHD
Protein Properties Length: 682aa    MW: 76949.4 Da    PI: 9.9698
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.181genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.84.9e-104224621353
                                               HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                                  Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                               + L ++F++n  ps++ +e ++k+lgL+ ++V+ WF+N R+
  evm_27.model.AmTr_v1.0_scaffold00025.181 422 DKLRKVFAENELPSRAFKENISKQLGLSIEKVSKWFKNARY 462
                                               679*************************************7 PP
2Homeobox20.58.3e-075355711147
                                               HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHH CS
                                  Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvW 47 
                                                ++ L+++F +n+ p+ +++ +L+k+l+++ +qV +W
  evm_27.model.AmTr_v1.0_scaffold00025.181 535 IIKKLQAAFTENQLPTIASKLKLSKQLDISYDQVHMW 571
                                               5789********************************* PP
3PHD31.93e-11214269151
                                               SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                                       PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                                               +C+ C+   +  +++++lCdg C+  fH+kCl+++l +e++p g   wlC+ C++k
  evm_27.model.AmTr_v1.0_scaffold00025.181 214 FCAKCKLgeAFPDDDIILCDGaCNCGFHQKCLDPPLATEDIPPGdqGWLCKICECK 269
                                               688898854556********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.02E-12206271IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.1E-10210269IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.14212269IPR019787Zinc finger, PHD-finger
PfamPF006281.0E-8214269IPR019787Zinc finger, PHD-finger
SMARTSM002495.0E-6214267IPR001965Zinc finger, PHD-type
CDDcd155043.33E-32214266No hitNo description
PROSITE patternPS013590215266IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.0E-10405461IPR009057Homeodomain-like
SuperFamilySSF466894.79E-9407470IPR009057Homeodomain-like
PROSITE profilePS5007112.212407467IPR001356Homeobox domain
SMARTSM003891.0E-6409471IPR001356Homeobox domain
CDDcd000864.34E-7422462No hitNo description
PfamPF000461.6E-7422462IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-6504571IPR009057Homeodomain-like
SuperFamilySSF466893.1E-6516572IPR009057Homeodomain-like
PROSITE profilePS500719.329522582IPR001356Homeobox domain
SMARTSM003890.0053524590IPR001356Homeobox domain
CDDcd000866.14E-4525573No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MQKSRKKIEP KKEKSPFKNS LTKKWQSKPR WQSKPRSQVK VIASILKKNK ASEFTTLRSL  60
PSKKSKVAHN AKSVKQTIGK NPGVNLDRVQ SSLKQDVRKE ATVVRARKKI KKSKRKQNVQ  120
LDEASRLQRR MKYLLVKIKL EQTLIDAYSG EGWKGQSREK IKPERELERA EKEIRKCKLG  180
IRDAFRQLDL LSAEGCIEDS VIDPDGRVFH EHIFCAKCKL GEAFPDDDII LCDGACNCGF  240
HQKCLDPPLA TEDIPPGDQG WLCKICECKT EILGAINAHL GARFSIENSW EDIFKEAATS  300
PDDENKSVLD PEEEWPSDDS EDDDYDPDQN GESSGGRSID ANVSDDSSSS NGMFWSSDDA  360
CSHSSRSHED GFMAESHKRV GTTNLGTSDC PITLDSEDGD GRDFTLSQRR HRRDVDYKKL  420
YDKLRKVFAE NELPSRAFKE NISKQLGLSI EKVSKWFKNA RYAALKIRKA DTTNGPNREK  480
VNVASNIGFR TKSKLTRAHV AKTLQSGHTR ENPKSSPMPS KKSHRRVPSA LPADIIKKLQ  540
AAFTENQLPT IASKLKLSKQ LDISYDQVHM WLKISGRLPR SKMRTQGSKD KSTSKKERRG  600
TTHCDADVGK KEMGDTGELY LAELERLFGL EMKIERLRRS LKLAKSNCSN GGDDNIDKGN  660
RPTSIEPFVM YVPVAEVREK L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106131RKKIKKSKRKQNVQLDEASRLQRRMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020526888.10.0pathogenesis-related homeodomain protein
TrEMBLW1PR000.0W1PR00_AMBTC; Uncharacterized protein
STRINGERN124670.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.27e-85pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]