PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00024.4
Common NameAMTR_s00024p00018300
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family FAR1
Protein Properties Length: 607aa    MW: 67371.1 Da    PI: 7.6699
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.4genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.82.4e-25182266189
                                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 
                                             +fY++YA++vGF  r sk+ +s r+g++++r++vCskeg+r+++ ++   + r+r++tr gCka+++vkke
  evm_27.model.AmTr_v1.0_scaffold00024.4 182 EFYDAYARHVGFISRASKTARSMRDGTFIRRDLVCSKEGFRAQKYQA---KLRPRPQTREGCKAMVRVKKE 249
                                             6******************************************9887...99******************* PP

                                    FAR1  72 kdgkwevtkleleHnHel 89 
                                               +kw +t++ +eHnH+l
  evm_27.model.AmTr_v1.0_scaffold00024.4 250 -GSKWILTRFIEEHNHPL 266
                                             .9**************99 PP
2FAR187.22.4e-27352438191
                                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 
                                             +fYn+YA+++GFs+r sk+ +s r+g++++r+fvCskeg+r++++ +   + r+ra+tr gC+a+++vk+e
  evm_27.model.AmTr_v1.0_scaffold00024.4 352 EFYNAYARQMGFSTRSSKTIRSMRDGRFIRRDFVCSKEGFRSSKNPA---TLRPRAQTREGCNAMIRVKRE 419
                                             6*****************************************98877...99******************9 PP

                                    FAR1  72 kdgkwevtkleleHnHelap 91 
                                               +kw +tk+ +eHnH+++p
  evm_27.model.AmTr_v1.0_scaffold00024.4 420 -GNKWLLTKFIKEHNHAMVP 438
                                             .9**************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-22182266IPR004330FAR1 DNA binding domain
PfamPF031011.4E-24352438IPR004330FAR1 DNA binding domain
SuperFamilySSF577561.34E-6538573IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.101.5E-4552575IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MESTINQGVT STENSVGSEN GDMSGKMIVG VESLSENAQN ETERLENVDP NLIMEHGTEG  60
AHESESLVNI NPNVVVKLCP EGAKESEKLA NVNPNVVMEL DSRAANESQS LATNDPNLVM  120
ELNVGFANGC RSLANVDPNE VMEIDSDSAG KEIVVNVNPI PLGSVDKPYI GMVFDSEEAA  180
REFYDAYARH VGFISRASKT ARSMRDGTFI RRDLVCSKEG FRAQKYQAKL RPRPQTREGC  240
KAMVRVKKEG SKWILTRFIE EHNHPLGNAR KLDPMRPLDP MKGKMVADVD SSYVGNSLDE  300
PGRLENVDAP AVMELCSGRA NEEMAVDVNP PDENADEPKV GMLFESEAAA KEFYNAYARQ  360
MGFSTRSSKT IRSMRDGRFI RRDFVCSKEG FRSSKNPATL RPRAQTREGC NAMIRVKREG  420
NKWLLTKFIK EHNHAMVPQG KVHLLRSHRR SSGMMRSPML TLDDPSATPF SANRIEIHPS  480
WDPIQTTRYN ELCNLAVKCA TEGAVNELVY NFAMKTLRKA QEDISFVRKN IGSPTQATSR  540
SKPVSEDQAK KKRQCLTCRD FGHDQRNCPN KGNVGVVLTT NGSLDMNQPF AYPDTQTVRP  600
SPFAAI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849424.20.0uncharacterized protein LOC18439188 isoform X2
RefseqXP_011625236.10.0uncharacterized protein LOC18439188 isoform X2
TrEMBLW1PUL90.0W1PUL9_AMBTC; Uncharacterized protein
STRINGERN110050.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1184056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.11e-37FAR1-related sequence 12
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]