PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00024.229
Common NameAMTR_s00024p00227390
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family AP2
Protein Properties Length: 526aa    MW: 57977 Da    PI: 8.9598
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.229genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-15239298155
                                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                               s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aaka++ a++k++g
  evm_27.model.AmTr_v1.0_scaffold00024.229 239 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAAKAYDLAALKYWG 298
                                               78*******************655454478446*************************98 PP
2AP222.92.1e-07341373136
                                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                                               s y+GV+++++ grW A+I  +     +k  +lg+f
  evm_27.model.AmTr_v1.0_scaffold00024.229 341 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTF 373
                                               78****************988532...5*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-12239298IPR001471AP2/ERF domain
CDDcd000185.24E-21239308No hitNo description
SuperFamilySSF541719.81E-17239308IPR016177DNA-binding domain
SMARTSM003802.2E-29240312IPR001471AP2/ERF domain
PROSITE profilePS5103219.045240306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-16240307IPR001471AP2/ERF domain
PRINTSPR003674.2E-5241252IPR001471AP2/ERF domain
PRINTSPR003674.2E-5288308IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-5341375IPR016177DNA-binding domain
PROSITE profilePS510328.873342373IPR001471AP2/ERF domain
SMARTSM003807.2E-4342407IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-4342374IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MDLSRTHQAP GLQSSRLIST SEFTNNNVER ENPKLEDFLG ATAHPPPFDP VYYQRGHHQA  60
LDFDRDHPST AGINVNIPSF LQSSTSSRER ESEEAQALTS SLIRRFDQPE TFIPSHLQNP  120
HLYNMALENA GSMSHAIGSG PGISGLKSWL RQNPIAPSDK RLVHDGSEKA GQIVASNGDF  180
QALSLSMSSG SQSTSVSLPQ SAAIVCVPSD NARKRGHGKA LTKEPVPRKS IETFGQRTSQ  240
YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK GRQVYLGGYD KEEKAAKAYD LAALKYWGPS  300
THINFPLSTY EKELEEMKNM TRQEFVANLR RKSSGFSRGA SVYRGVTRHH QHGRWQARIG  360
RVAGNKDLYL GTFNPGQPSI SSEFPGDPTN ADANKESAIF PQVEEAARLL TDLSGNTNNS  420
LVSSLSNPSS NPESPNHSST HCENDPNCRK MTIYNGVRQV QDGGGGDYSQ ALFLSPEFGG  480
KYAKYEGSNI SGNNVGGNIG WMGSNRPSFP VFHQHQLPMF ALWND*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625364.20.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ1PFE11e-101AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLW1PVC70.0W1PVC7_AMBTC; Uncharacterized protein
STRINGERN112300.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-84AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]