PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00023.4
Common NameAMTR_s00023p00015970
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family FAR1
Protein Properties Length: 607aa    MW: 67583.4 Da    PI: 7.3187
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00023.4genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.73e-26159244189
                                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 
                                             kfYn+YA+ vGF +r++k+++s++n ei+ r+f+C +eg+r+ ++++   +rr+ra+ r+gC a+l+vk+ 
  evm_27.model.AmTr_v1.0_scaffold00023.4 159 KFYNAYARLVGFGTRRAKTRRSRTNSEIIGRDFYCWREGRRDAKHDN---KRRHRAQLRVGCMAMLRVKRA 226
                                             6*****************************************99888...9******************** PP

                                    FAR1  72 kdgkwevtkleleHnHel 89 
                                             ++gkw+++k++++H H++
  evm_27.model.AmTr_v1.0_scaffold00023.4 227 ETGKWVISKFVKDHCHKF 244
                                             ****************98 PP
2FAR182.66.8e-26322413190
                                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvk 69 
                                             kfY +YA++vGF +r +k+++s+ n+e++ r+ +C ++gkr++++++  ++ + r+r+++r+gCka++++k
  evm_27.model.AmTr_v1.0_scaffold00023.4 322 KFYTDYARHVGFGTRWAKTRRSRANKEVIARDIYCFRQGKRKPKRDAnvRDGKVRQRPHSRIGCKAMIRIK 392
                                             6******************************************999866777899**************** PP

                                    FAR1  70 kekdgkwevtkleleHnHela 90 
                                             k+++gkw++++++++H H++ 
  evm_27.model.AmTr_v1.0_scaffold00023.4 393 KSNNGKWVISSFVKKHCHKFL 413
                                             ******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-23159244IPR004330FAR1 DNA binding domain
PfamPF031013.9E-23322413IPR004330FAR1 DNA binding domain
SuperFamilySSF577563.24E-6525566IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.108.9E-4534566IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MDHTSFDSGA SPIYSDQDHR SDESQSVIDP GGSQSVIDPG GSQSVIDLGG TSMEGNEEVI  60
PSENANDAND ERALTLTGEE ADMMSNSEAQ AGGLGNGGST QRDRASDESQ MVLDPSGFSL  120
GVDGEVIEHE NGNEADICAV EDVEPYEGME FDSEDAAYKF YNAYARLVGF GTRRAKTRRS  180
RTNSEIIGRD FYCWREGRRD AKHDNKRRHR AQLRVGCMAM LRVKRAETGK WVISKFVKDH  240
CHKFLAPDKI GLIRSHRRIS DDAKKLLALY ASAMSKRPQL MSKEQAGGSG STQENEDEDE  300
EPVQEGEPYV GMEFDTEYAA YKFYTDYARH VGFGTRWAKT RRSRANKEVI ARDIYCFRQG  360
KRKPKRDANV RDGKVRQRPH SRIGCKAMIR IKKSNNGKWV ISSFVKKHCH KFLTPGEVGF  420
TRMRKRIFDP SGDLIDLYNE ERAAGSQAPR TIRHDVLCQL VNQITEDGAI SEDLYEFTRL  480
CLSRLAVEVA ERKKLVTNNQ PVSSNQASLS LDAGFQAMEI EPQSLTREPS RSNSRGRPPK  540
NNTKCNVCKG TGHNRRTCPI VRGGGSNLNI GIGMVGTEIN LDENQISQIC TGDEMPAVQI  600
LSWGQI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011626980.10.0protein FAR1-RELATED SEQUENCE 7
TrEMBLW1NIB80.0W1NIB8_AMBTC; Uncharacterized protein
STRINGERM955320.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1184056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.11e-33FAR1-related sequence 12
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]