PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.332
Common NameAMTR_s00022p00238000
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family AP2
Protein Properties Length: 329aa    MW: 36013.8 Da    PI: 9.7006
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.332genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.92.1e-07292324136
                                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                                               s y+GV+++++ grW A+I  +     +k  +lg+f
  evm_27.model.AmTr_v1.0_scaffold00022.332 292 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTF 324
                                               57****************988532...5*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.2E-5162263IPR001471AP2/ERF domain
PROSITE profilePS5103212.128162257IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-8221259IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-8227258IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-6292326IPR016177DNA-binding domain
PROSITE profilePS510329.427293328IPR001471AP2/ERF domain
SMARTSM003800.016293326IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-4293325IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MPAEDTTDPF APSTSTFNDL NSGSSNMDTK RGPKLEDFLG GVTFRESGTD ALTSGIFRPI  60
QPSQSFSGEY STQKAIGLSM IKSWLRENPA KEVTGNLNNN LQSLTLSMGT GSSPGVNGEN  120
AASSSSMESE RNRPPPLDSQ TGAVEAVNVR KPVDNFGQRT SIYRGVTSVG TDGRVDMKHI  180
FGTTVAGERA KPERDAKFQK KSNFSTGLWP ESENSRSDSG KSDRDLDGGY DKEEKAARAY  240
DLAALKYWGT TTTTNFPISN YEKELEEMKH MTRQEYVASL RRKSSGFSRG ASIYRGVTRH  300
HQHGRWQARI GRVAGNKDLY LGTFSKFV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625525.11e-179AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ8LSN29e-75BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLW1PUK40.0W1PUK4_AMBTC; Uncharacterized protein
STRINGERN117330.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.15e-69AP2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]