PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00021.51
Common NameAMTR_s00021p00102740
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 268aa    MW: 29347.1 Da    PI: 7.4459
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00021.51genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-1076121353
                                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                                              r+h+ +ErrRR+riN  +++Lr l+  +      K++Ka+ L ++++++++
  evm_27.model.AmTr_v1.0_scaffold00021.51  76 RSHSDAERRRRERINAHLNTLRALISGP-----NKMDKASLLAQVINHLRD 121
                                              58*************************8.....6*************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.65973122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1274130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.16E-1076121No hitNo description
PfamPF000103.0E-876121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-1177131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-979128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.46E-6158211No hitNo description
Gene3DG3DSA:3.30.70.2608.5E-7158208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGSSFFGSDF LCFYGNGDDE CCFDYGNGAV GFGGVIGEEW GWGRKKALVL DGSRGELVEE  60
VPRAVVTEAK NAAALRSHSD AERRRRERIN AHLNTLRALI SGPNKMDKAS LLAQVINHLR  120
DSKRKADEIS KGSLIPTAFD EVRVENEADG PNKEGVFLRV SLCCDDRPDL LIDLKRTLQN  180
LRLKIISAEI STLGGRVKNV FVLTTCKENG DANKHQAVND AAKNLVTCSD NSHAKCADEG  240
ADLLHEDNGG RSTSRAQWRL PRHLMRP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011626267.11e-158transcription factor bHLH30
TrEMBLW1PV500.0W1PV50_AMBTC; Uncharacterized protein
STRINGERN139120.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.13e-37bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]