PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00019.64
Common NameAMTR_s00019p00086450, LOC18435312
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family AP2
Protein Properties Length: 358aa    MW: 39335.5 Da    PI: 8.7448
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00019.64genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.5e-1646106156
                                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 
                                              s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g+
  evm_27.model.AmTr_v1.0_scaffold00019.64  46 SVYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAARAYDLAALKYWGH 106
                                              78*******************999955656446*************************997 PP
2AP251.23e-16148199155
                                      AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                              s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  evm_27.model.AmTr_v1.0_scaffold00019.64 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 199
                                              89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-1746115IPR016177DNA-binding domain
PfamPF008471.1E-1246106IPR001471AP2/ERF domain
SMARTSM003801.6E-2547119IPR001471AP2/ERF domain
PROSITE profilePS5103220.52147113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1647114IPR001471AP2/ERF domain
PRINTSPR003674.0E-64859IPR001471AP2/ERF domain
CDDcd000182.70E-23148209No hitNo description
PfamPF008475.6E-12148199IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17148209IPR016177DNA-binding domain
SMARTSM003801.2E-24149213IPR001471AP2/ERF domain
PROSITE profilePS5103218.334149207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17149208IPR001471AP2/ERF domain
PRINTSPR003674.0E-6189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAKTSNHQST NPTISTPYST TSTTTTQKLK RTRKSVPRDS PPQRSSVYRG VTRHRWTGRY  60
EAHLWDKNCW NESQNKKGRQ VYLGAYDDEE AAARAYDLAA LKYWGHDTIL NFPLSTYTAE  120
LKEMEGLSKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY  180
ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YIKWLRPNNS TNANPNPAAV THPKPSPLDD  240
VSASSQPLGV GCFEQSHHVG PPSSSAARSN GSASSALGLL LQSSKFKEML KMTSAADIST  300
KSPESEPLSA SAFPDDVQTY FECGGDSGGF VGDFAETEGM FGDLHAYGSG FLCETSL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006845421.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-109AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLW1PHJ40.0W1PHJ4_AMBTC; Uncharacterized protein
STRINGERN070960.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.18e-95ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]