PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00019.292
Common NameAMTR_s00019p00225230
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family AP2
Protein Properties Length: 490aa    MW: 53799.5 Da    PI: 7.0932
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00019.292genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.9e-12139195155
                                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                               s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  evm_27.model.AmTr_v1.0_scaffold00019.292 139 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 195
                                               57*******************5444.2455536655.779999**************98 PP
2AP247.35e-15238289155
                                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                               s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  evm_27.model.AmTr_v1.0_scaffold00019.292 238 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 289
                                               57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-9139195IPR001471AP2/ERF domain
CDDcd000187.99E-20139205No hitNo description
SuperFamilySSF541713.99E-15139205IPR016177DNA-binding domain
PROSITE profilePS5103217.57140203IPR001471AP2/ERF domain
SMARTSM003801.2E-23140209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-12140204IPR001471AP2/ERF domain
PRINTSPR003672.0E-6141152IPR001471AP2/ERF domain
PfamPF008476.2E-10238289IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18238299IPR016177DNA-binding domain
CDDcd000184.27E-25238299No hitNo description
PROSITE profilePS5103219.045239297IPR001471AP2/ERF domain
SMARTSM003801.5E-33239303IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-18239298IPR001471AP2/ERF domain
PRINTSPR003672.0E-6279299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDCSNNWLAF SLSSNPPHQT PPEPSPQLCL LEAFNTSGWP KDNTHREEGS GGGDLSMIAS  60
AAPPKLEDFL GGAFSGHYSG DFSGNHARKP NTNYDSDLKS IAQGVLQVFP TSQSEVEKSI  120
LASDSSTKKS IDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE  180
KAARAYDLAA LKYWGPSTTT NFPVSNYEKE LEEMKNMTRQ EFVASLRRKS SGFSRGASIY  240
RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR  300
YDVKSIANSN LPIGGITNKT KASSESSSSD IKTLETKLTD EQELSSLSPQ SEPISFAIPI  360
KLDHDWSLMG YQNPSRIEPF HNVSSMTSSA INEAPLTMDF STNSSTYQSN NCFINGGFTA  420
QQSLPSVTSI DSENGKALYY LYQNPSSLYR SSACENAGYG AWVAPPLPAF PSSKTPGLAL  480
CQTPIFGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020523524.10.0AP2-like ethylene-responsive transcription factor AIL5 isoform X2
SwissprotQ6PQQ31e-133AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLW1PHY50.0W1PHY5_AMBTC; Uncharacterized protein
STRINGERN073240.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-129AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  4. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  5. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  6. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]