PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

CO-like

Protein Properties

Length: 391aa MW: 42326.2 Da PI: 6.0148

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00019.214	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.3	2e-05	46	86	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 + C+ ++ + lfC+ ++ +lC C H g H+ evm_27.model.AmTr_v1.0_scaffold00019.214 46 KACEGCKATAALLFCRADSAFLCLGCDARVH-GanklasrHE 86 67****99***************9999.4466666676 PP
2	zf-B_box	24.6	5.4e-08	88	130	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+ +e+ +++ C+ + lC C +H+ H++ evm_27.model.AmTr_v1.0_scaffold00019.214 88 VWVCEVCEQAPASVTCKADAAALCVACDADIHSAnplarrHER 130 689*****************************65777777775 PP
3	CCT	70.1	5.5e-24	319	362	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ evm_27.model.AmTr_v1.0_scaffold00019.214 319 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 362 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.8E-10	43	90	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.855	43	90	IPR000315	B-box-type zinc finger
CDD	cd00021	1.51E-7	48	90	No hit	No description
PROSITE profile	PS50119	10.608	86	133	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.3E-6	87	132	IPR000315	B-box-type zinc finger
CDD	cd00021	1.19E-9	89	133	No hit	No description
SMART	SM00336	1.2E-9	91	133	IPR000315	B-box-type zinc finger
Pfam	PF06203	6.1E-18	319	361	IPR010402	CCT domain
PROSITE profile	PS51017	16.787	319	361	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009658	Biological Process	chloroplast organization
GO:0009909	Biological Process	regulation of flower development
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0048576	Biological Process	positive regulation of short-day photoperiodism, flowering
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MSTANVSATT KPDSEPRGSG DAFSAPFAAQ FPGHEAPPSA PWSVAKACEG CKATAALLFC 60 RADSAFLCLG CDARVHGANK LASRHERVWV CEVCEQAPAS VTCKADAAAL CVACDADIHS 120 ANPLARRHER FPVVPFYEPP APKSSASCLL VPDRGPKTTE NAKLDDEDED DDHNSIGADE 180 AEAATWLLPN PKIGGGEMKS ADYFFPEVDP YLDLEYGSPV DQRFQAHNGT DSVVPVQSKG 240 MGNDQCLEFD FSRPKNGYSY TTASMSHSVS SSSLDVGVVP DGSAMTDISN PYSRTLKGGQ 300 DLVAHVPSQP SSHYPPMDRE ARVLRYREKR KNRKFEKTIR YASRKAYAET RPRIKGRFAK 360 RTDIEVEVDR IYSSAAALMA DTSYGIVPSF *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MSTANVSATT KPDSEPRGSG DAFSAPFAAQ FPGHEAPPSA PWSVAKACEG CKATAALLFC  60
RADSAFLCLG CDARVHGANK LASRHERVWV CEVCEQAPAS VTCKADAAAL CVACDADIHS  120
ANPLARRHER FPVVPFYEPP APKSSASCLL VPDRGPKTTE NAKLDDEDED DDHNSIGADE  180
AEAATWLLPN PKIGGGEMKS ADYFFPEVDP YLDLEYGSPV DQRFQAHNGT DSVVPVQSKG  240
MGNDQCLEFD FSRPKNGYSY TTASMSHSVS SSSLDVGVVP DGSAMTDISN PYSRTLKGGQ  300
DLVAHVPSQP SSHYPPMDRE ARVLRYREKR KNRKFEKTIR YASRKAYAET RPRIKGRFAK  360
RTDIEVEVDR IYSSAAALMA DTSYGIVPSF *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006845571.1	0.0	zinc finger protein CONSTANS-LIKE 4
Swissprot	Q9FHH8	6e-96	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	W1PI08	0.0	W1PI08_AMBTC; Uncharacterized protein
STRING	ERN07246	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP691	17	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	6e-78	CONSTANS-like 4

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00019.214
Entrez Gene	18435463

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]